View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1726_high_3 (Length: 642)

Name: NF1726_high_3
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1726_high_3
NF1726_high_3
[»] chr2 (1 HSPs)
chr2 (1-633)||(12678858-12679488)


Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Original strand, 12678858 - 12679488
Alignment:
Q  1 ctcacggtctttccttggaagtccatgatattcatatgtaaactatatctaaaatagctaggtagtttcacttatgcattctatcatgcaaacttccata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  12678858 ctcacggtctttccttggaagtccatgatattcatatgtaaactatatctaaaatagctaggtagtttcacttatgcattctatcatgcaaact-cgata 12678956  T
Q  101 tgaaaccctattttctt-ttttatttaaattaaatggataatgggaatattgtattaactcaaggtatgctttagagttaaattaattcaagtctatatt 199  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12678957 tgaaaccctatttttttattttatttaaattaaatggagaatgggaatattgtattaactaaaggtatgctttagagttaaattaattcaagtctatatt 12679056  T
Q  200 ttgattttgtttgttgttgatgagaacacgcttataacattttactagatatcaattcaataatatgtggagttacatcaataaaagtgtggggactagc 299  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12679057 ttgattttgtttgttgttgaagggaacacgcttatagcattttactagatatcaattcaataatatgtggagttacatcaataaaagtgtggggactagt 12679156  T
Q  300 taagaatgtggtcgctctcgttaaagtgtgagcaacctcatttgtttagctcatacttgtgttgtctgtaatccaccattgcgccacacatgaacaacat 399  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12679157 taagaatgcggtcactctcgttaaagtgtgagcaacctcatttgtttggctcatacttgtgttgtctgtaatccaccattgcgccacacatgaacaacat 12679256  T
Q  400 tctcggacaaggaaggcctcgatcattaactctctcccgtgttggtaaacattcatgacacatactctctacataaaactcttcactttgggagggactt 499  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||    
T  12679257 tctcggacaaggaatgcctcgatcattaactctctcccgtgttggtaaacattcatg--acatactctctacataaaactcttcactttgggagggattt 12679354  T
Q  500 agagcttccaaatagtagaccataaaccaggttttttggaggtgggaatcatatggattagtttccatacaaatatgtgtttcgcactgaatattgccca 599  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  12679355 agagcttccaaatagtggaccataaaccaggttttttggaggtgggaatcatatggattagtatccatacaaatatgtgtttcacactgaatattgccca 12679454  T
Q  600 tttttctctgccttcaaaataagaatatattctt 633  Q
    |||||||||||||||||||||||||||| |||||    
T  12679455 tttttctctgccttcaaaataagaatatcttctt 12679488  T

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