View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_low_11 (Length: 341)
Name: NF1726_low_11
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 41 - 326
Target Start/End: Original strand, 879260 - 879545
Alignment:
| Q |
41 |
cttttttcaatgagttagcgtctccttttaacaatagttgtttatgaccaacagagggcagaaaggaggattacacggtgttttcgtttgagtaggggac |
140 |
Q |
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| T |
879260 |
cttttttcaatgagttaacgtctccttttaacaatagttgtttatgactaacagagggcagaaaggaggattaaacagtgttttcgtttgagtcggggac |
879359 |
T |
|
| Q |
141 |
tagtgtggcaacatcttaaacttttaaggaccaaaatggtggcaagcataaacaccattggtgccgttcgtaatttcatatcgacaaccaagaaattacg |
240 |
Q |
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| T |
879360 |
tagtgtggcaacatcttaaacttttaaggaccaaaatggtggcaagcataaacaccattggtgccgttcgtaatttcatatcgacaaccaagaaattacg |
879459 |
T |
|
| Q |
241 |
tgtgtagtcgcaggacgtagaatgagtgagaaaggaagcatcatgtgctatgcaatgcacataaccaattcagctaccataagcag |
326 |
Q |
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| T |
879460 |
tgtgtagtcgcaggacgtagaatgagtgagaaaggaagcatcatgtgctatgcaatgcacataaccaattcagctaccataagcag |
879545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 317
Target Start/End: Complemental strand, 1161826 - 1161693
Alignment:
| Q |
184 |
aagcataaacaccattggtgccgttcgtaatttcatatcgacaaccaagaaattacgtgtgtagtcgcaggacgtagaatgagtgagaaaggaagcatc- |
282 |
Q |
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| T |
1161826 |
aagcataagctccattggtgtcgtttccaatttcatgtcgacaacaaagaaattatgtgtgtagccgcag-acatagagtgagtgagaaaggaaccatcc |
1161728 |
T |
|
| Q |
283 |
atgtgctatgcaatgcacataaccaattcagctac |
317 |
Q |
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| T |
1161727 |
atgtgctatgcaatgcacataaccaagtcagctac |
1161693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 1162228 - 1162146
Alignment:
| Q |
84 |
atgaccaacagagggcagaaaggaggattacacggtgttttcgtttgagtaggggactagtgtggcaacatcttaaacttttaa |
167 |
Q |
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| T |
1162228 |
atgactaacagagtgtagagaggaggattaaacgttgttttcgtttgatt-ggggactagtgtggcaacatcttacacttttaa |
1162146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 23045320 - 23045349
Alignment:
| Q |
18 |
ttggttgttcaaataacactactctttttt |
47 |
Q |
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| T |
23045320 |
ttggttgttcaaataacactactctttttt |
23045349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 47078165 - 47078137
Alignment:
| Q |
16 |
aattggttgttcaaataacactactcttt |
44 |
Q |
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| T |
47078165 |
aattggttgttcaaataacactactcttt |
47078137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 9099490 - 9099462
Alignment:
| Q |
19 |
tggttgttcaaataacactactctttttt |
47 |
Q |
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| T |
9099490 |
tggttgttcaaataacactactctttttt |
9099462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 49417732 - 49417760
Alignment:
| Q |
16 |
aattggttgttcaaataacactactcttt |
44 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
49417732 |
aattggttgttcaaataacactactcttt |
49417760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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