View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1726_low_12 (Length: 308)

Name: NF1726_low_12
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1726_low_12
NF1726_low_12
[»] chr7 (5 HSPs)
chr7 (14-289)||(3649294-3649561)
chr7 (15-91)||(3657601-3657677)
chr7 (15-102)||(3647024-3647111)
chr7 (26-92)||(3641214-3641280)
chr7 (173-221)||(3657482-3657530)
[»] chr5 (13 HSPs)
chr5 (15-103)||(10109298-10109386)
chr5 (15-97)||(10212303-10212385)
chr5 (15-91)||(10102813-10102889)
chr5 (15-97)||(10105891-10105973)
chr5 (25-102)||(10209762-10209839)
chr5 (48-100)||(12104608-12104660)
chr5 (43-89)||(13856027-13856073)
chr5 (14-99)||(9660257-9660342)
chr5 (24-88)||(12109378-12109442)
chr5 (43-92)||(9674769-9674818)
chr5 (45-97)||(37278735-37278787)
chr5 (43-72)||(3467669-3467698)
chr5 (43-91)||(10215930-10215978)
[»] chr8 (4 HSPs)
chr8 (15-102)||(31555148-31555235)
chr8 (15-102)||(31878234-31878321)
chr8 (15-100)||(31558233-31558318)
chr8 (46-92)||(13568429-13568475)
[»] chr1 (11 HSPs)
chr1 (15-97)||(42202408-42202490)
chr1 (15-97)||(42211276-42211358)
chr1 (34-100)||(42217270-42217336)
chr1 (27-91)||(42409606-42409670)
chr1 (15-97)||(2176335-2176417)
chr1 (15-97)||(10542395-10542477)
chr1 (15-97)||(45151996-45152078)
chr1 (43-97)||(45316458-45316512)
chr1 (43-91)||(42417650-42417698)
chr1 (43-102)||(43014373-43014432)
chr1 (43-92)||(51795025-51795074)
[»] chr3 (2 HSPs)
chr3 (33-100)||(46446214-46446281)
chr3 (43-102)||(21884103-21884162)
[»] chr4 (7 HSPs)
chr4 (27-96)||(46362530-46362599)
chr4 (43-97)||(17889425-17889479)
chr4 (15-91)||(25698817-25698893)
chr4 (43-76)||(36790859-36790892)
chr4 (43-76)||(49588201-49588234)
chr4 (46-85)||(20918686-20918725)
chr4 (37-69)||(33156193-33156225)
[»] chr6 (1 HSPs)
chr6 (43-80)||(33891612-33891649)
[»] chr2 (3 HSPs)
chr2 (43-91)||(26568347-26568395)
chr2 (43-76)||(5900549-5900582)
chr2 (43-73)||(43633450-43633480)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 3649561 - 3649294
Alignment:
Q  14 atatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgatcataaattggt 113  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||      
T  3649561 atatgccgataattgtgatgctaacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacaactccgtgattataaattga- 3649463  T
Q  114 aaattggagagatgttttccttttatatatgagcagattagtttcacttatgctctagtcgatgtgggacttaagtctgaacatagacaattagacatca 213  Q
           ||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||    
T  3649462 -------agagatgttttccttttatatatgagcagcttagtttcacttatgcgctagccaatgtgggacttaagtcagaacatagacaattagacatca 3649370  T
Q  214 aatcactttttgtagaactatttcaatttactctcgaagaagtgctggtggaggatcaatgcgtagtagtggttat 289  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3649369 aatcactttatgtagaactatttcaatctactctcgaagaagtgctggtggaggatcaacgcgtagtagtggttat 3649294  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 3657677 - 3657601
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 91  Q
    ||||||| || |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3657677 tatgccgctatttgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 3647111 - 3647024
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 102  Q
    ||||||| |||| |||| ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  3647111 tatgccgctaatagtgacgctgacacggtattctttagtaaaaggcgaaagaatagtttgctatgtcatcatcacacggctccgtgat 3647024  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 3641280 - 3641214
Alignment:
Q  26 ttgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 92  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3641280 ttgtgacgctgatacagtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 3641214  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 3657530 - 3657482
Alignment:
Q  173 cgatgtgggacttaagtctgaacatagacaattagacatcaaatcactt 221  Q
    ||||||||||||| |||| ||||||||||| ||||||| | ||||||||    
T  3657530 cgatgtgggactttagtcagaacatagacagttagacacccaatcactt 3657482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 10109386 - 10109298
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgatc 103  Q
    ||||||| ||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  10109386 tatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgatc 10109298  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 10212303 - 10212385
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    ||||||| |||||||||  || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10212303 tatgccgctaattgtgacactcacacagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 10212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 10102889 - 10102813
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 91  Q
    ||||||| ||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10102889 tatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacac 10102813  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 10105973 - 10105891
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    ||||||| ||||| ||| ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10105973 tatgccgctaattatgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 10105891  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 10209762 - 10209839
Alignment:
Q  25 attgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 102  Q
    ||||||| ||| ||||  ||||||||||||||||||||||||||||||||||||||  |||||||||| |||| ||||    
T  10209762 attgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgttcatcacacggctccgtgat 10209839  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 12104608 - 12104660
Alignment:
Q  48 tttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 12104660  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 13856073 - 13856027
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcac 89  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  13856073 tattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcac 13856027  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 9660257 - 9660342
Alignment:
Q  14 atatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccat 99  Q
    |||||| | ||||||||| | | ||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||| | ||||||    
T  9660257 atatgctgctaattgtgacgttcacacagtattctttagtaaaaggcaaaataatagttcgctatgtgatcatcacaaggctccat 9660342  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 12109378 - 12109442
Alignment:
Q  24 aattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatca 88  Q
    |||||||| ||| ||||  |||||||||||||||||||||||||||||| ||||||| |||||||    
T  12109378 aattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatca 12109442  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 9674769 - 9674818
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 92  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  9674769 tattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacg 9674818  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 37278735 - 37278787
Alignment:
Q  45 ttctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||| ||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctcc 37278787  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 3467669 - 3467698
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagtt 72  Q
    ||||||||||||||||||||||||||||||    
T  3467669 tattctttagtaaaaggcgaaagaatagtt 3467698  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 10215930 - 10215978
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 91  Q
    |||||||||||||||||| |||||||||||  |||||| |||| |||||    
T  10215930 tattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacac 10215978  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 31555148 - 31555235
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 102  Q
    ||||||| ||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  31555148 tatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgat 31555235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 31878321 - 31878234
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 102  Q
    ||||||| ||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  31878321 tatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgat 31878234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 31558233 - 31558318
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatg 100  Q
    ||||||| ||||||||| | | ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  31558233 tatgccgctaattgtgacgttcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 31558318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 13568429 - 13568475
Alignment:
Q  46 tctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 92  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacg 13568475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 42202408 - 42202490
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    ||||||| ||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  42202408 tatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctcc 42202490  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 42211276 - 42211358
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    ||||||| ||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  42211276 tatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctcc 42211358  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 42217270 - 42217336
Alignment:
Q  34 ctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  42217270 ctgacacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatg 42217336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 42409670 - 42409606
Alignment:
Q  27 tgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 91  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409670 tgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 42409606  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 2176335 - 2176417
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    ||||||| ||| |||||  |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  2176335 tatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacgtctcc 2176417  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 10542477 - 10542395
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    ||||||| ||||||| | ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10542477 tatgccgctaattgtaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 10542395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 45152078 - 45151996
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    ||||||| ||| |||||  |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  45152078 tatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacggctcc 45151996  T

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Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 45316458 - 45316512
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45316458 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggctcc 45316512  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 42417698 - 42417650
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 91  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42417698 tattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacac 42417650  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 43014373 - 43014432
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 102  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| |||| ||||    
T  43014373 tattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgat 43014432  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 51795074 - 51795025
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 92  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  51795074 tattctttagtaaaaggcgaaacaatagtttgctatgtcatcatcacacg 51795025  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 46446281 - 46446214
Alignment:
Q  33 gctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatg 100  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  46446281 gctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacaaggctccatg 46446214  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 21884103 - 21884162
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 102  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| |||| ||||    
T  21884103 tattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgat 21884162  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 46362530 - 46362599
Alignment:
Q  27 tgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactc 96  Q
    |||||||||||||   ||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  46362530 tgtgatgctgacatggtattctttagtaaaaagcgaaataatagttcgctatgtcatcattacacgactc 46362599  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 17889479 - 17889425
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 97  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  17889479 tattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 17889425  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 25698893 - 25698817
Alignment:
Q  15 tatgccgataattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 91  Q
    ||||||| ||||| ||| ||| ||||  ||||||||| ||||||||||||||||||| | |||||| ||||||||||    
T  25698893 tatgccgctaattatgacgctcacacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcacac 25698817  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 36790892 - 36790859
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgct 76  Q
    ||||||||||||||||||||||||||||||||||    
T  36790892 tattctttagtaaaaggcgaaagaatagttcgct 36790859  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 49588201 - 49588234
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgct 76  Q
    ||||||||||||||||||||||||||||||||||    
T  49588201 tattctttagtaaaaggcgaaagaatagttcgct 49588234  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 20918725 - 20918686
Alignment:
Q  46 tctttagtaaaaggcgaaagaatagttcgctatgtcatca 85  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtgatca 20918686  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 33156193 - 33156225
Alignment:
Q  37 acacattattctttagtaaaaggcgaaagaata 69  Q
    ||||||||||||||||||||| |||||||||||    
T  33156193 acacattattctttagtaaaatgcgaaagaata 33156225  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 33891649 - 33891612
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgt 80  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33891649 tattctttagtaaaaggcgaaagaatagttcgctatgt 33891612  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 26568395 - 26568347
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 91  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||||    
T  26568395 tattctttagtaaaaggcaaaagaatagttcgctatgtgctcatcacac 26568347  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 5900582 - 5900549
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttcgct 76  Q
    ||||||||||||||||||||||||||||||||||    
T  5900582 tattctttagtaaaaggcgaaagaatagttcgct 5900549  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 73
Target Start/End: Original strand, 43633450 - 43633480
Alignment:
Q  43 tattctttagtaaaaggcgaaagaatagttc 73  Q
    |||||||||||||||||||||||||||||||    
T  43633450 tattctttagtaaaaggcgaaagaatagttc 43633480  T

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