View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1726_low_15 (Length: 271)

Name: NF1726_low_15
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1726_low_15
NF1726_low_15
[»] chr3 (16 HSPs)
chr3 (16-255)||(679761-680000)
chr3 (19-253)||(747681-747920)
chr3 (74-253)||(9595182-9595361)
chr3 (86-250)||(2491423-2491587)
chr3 (100-255)||(9562514-9562672)
chr3 (74-252)||(2475981-2476159)
chr3 (96-253)||(2474463-2474617)
chr3 (86-149)||(7334931-7334994)
chr3 (184-253)||(2659683-2659752)
chr3 (180-252)||(2630771-2630843)
chr3 (74-149)||(755292-755367)
chr3 (86-141)||(7325065-7325120)
chr3 (74-149)||(9566482-9566557)
chr3 (183-253)||(755176-755246)
chr3 (199-253)||(9566378-9566432)
chr3 (180-250)||(2644902-2644972)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 680000 - 679761
Alignment:
Q  16 agattctcggtaggtttcccatcaaattaccaacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaacattcgcaaagaagcaccttc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  680000 agattctcggtaggtttcccatcaaattaccaacttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaagaagcaccttc 679901  T
Q  116 aattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatcccctcgattttatcaacttc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679900 aattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatcccctcgattttatcaacttc 679801  T
Q  216 taccgttgttacacatacacaactttaccctcctaatatt 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  679800 taccgttgttacacatacacaactttaccctcctaatatt 679761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 747920 - 747681
Alignment:
Q  19 ttctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaacattcgcaaagaagcacct 113  Q
    ||||||||||| |||||||||||||||     |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  747920 ttctcggtaggcttcccatcaaattactcgtacaacttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaagaagcacct 747821  T
Q  114 tcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatcccctcgattttatcaact 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||    
T  747820 tcaattatcaactaagcgccaccacctcatgataacctcttggaacaacttggctgagttagttgagtatgtttctccaatcccctcggttttatctact 747721  T
Q  214 tctaccgttgttacacatacacaactttaccctcctaata 253  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  747720 tctatcgttgttacacatacacaactttaccctcctaata 747681  T

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Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 74 - 253
Target Start/End: Complemental strand, 9595361 - 9595182
Alignment:
Q  74 attctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagtt 173  Q
    ||||||||||| ||||||||| ||| |||||||| ||||||||||| ||||| ||||||||| ||||||||||| |||||  ||||||||||||||| ||    
T  9595361 attctcttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccaccacctcatgatagcctctatgaacaacttggctgattt 9595262  T
Q  174 agttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaata 253  Q
    ||||   |||||||||||||||| |||  |||| || ||||||||| |||||||||| ||||||||||||||||||||||    
T  9595261 agttctatatgattctccaatccactcagttttttctacttctaccattgttacacagacacaactttaccctcctaata 9595182  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 2491423 - 2491587
Alignment:
Q  86 ctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttgagtatga 185  Q
    ||||||| | ||||||||| ||||| |||||||| ||||| ||||||||| |||||||| |||||||    |||||||||| |||||| ||| |  ||||    
T  2491423 ctgatcctaaattcgcaaaaaagcatcttcaattgtcaacaaagcgccaccacctcatggtaacctcaaaaaacaacttgggtgagttggttcatcatga 2491522  T
Q  186 ttctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctccta 250  Q
    ||| ||||| |||||| |||| || |||||||||||| ||||||| || ||||||||||||||||    
T  2491523 ttccccaataccctcgcttttttctacttctaccgttattacacagacccaactttaccctccta 2491587  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 255
Target Start/End: Complemental strand, 9562672 - 9562514
Alignment:
Q  100 gcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttg---gctgagttagttgagtatgattctccaatcc 196  Q
    |||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||  | |   | |||||| ||| || ||||||  |||||||    
T  9562672 gcaaagaagcaccttcaattgtcaactaagcgccaccacctcttggtaacctcttggaacatttcgcgtggtgagtttgttcagcatgatttcccaatcc 9562573  T
Q  197 cctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatatt 255  Q
    ||| | |||| || |||||||||| ||||||||| |||||||||||| |||||||||||    
T  9562572 ccttggttttttctacttctaccgctgttacacagacacaactttacgctcctaatatt 9562514  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 2475981 - 2476159
Alignment:
Q  74 attctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagtt 173  Q
    ||||||||||| ||||||| | |||||||||||| ||||||||||| ||||| ||||||||| ||||||||  ||  | | | ||||  |    ||||||    
T  2475981 attctcttatttctgatcctaaattcgcaaagaaacaccttcaattgtcaacaaagcgccaccacctcatgcgaaaatgtcgtaacatatcacgtgagtt 2476080  T
Q  174 agttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaat 252  Q
    ||||  ||||||||| |||||||| ||  | || || ||||| |||||||||||||| |||||||||||||||||||||    
T  2476081 agttctgtatgattcgccaatcccatccgtattttctacttcaaccgttgttacacagacacaactttaccctcctaat 2476159  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 253
Target Start/End: Original strand, 2474463 - 2474617
Alignment:
Q  96 attcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatc 195  Q
    |||||||||||| ||||||||||||||||  ||||||||| |||||||| |||| ||| | ||| |||| | |||||  ||| |||||||||| |||||     
T  2474463 attcgcaaagaaacaccttcaattatcaaacaagcgccaccacctcatggtaacatctagcaactacttaggtgagtacgttcagtatgattccccaata 2474562  T
Q  196 ccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaata 253  Q
    |||||| |||| || |  ||||   |  ||| ||| ||||||||||||||||||||||    
T  2474563 ccctcgcttttttctaagtcta---tcattatacagacacaactttaccctcctaata 2474617  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 7334994 - 7334931
Alignment:
Q  86 ctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac 149  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||    
T  7334994 ctgatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccaccacctcatggtaac 7334931  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 2659752 - 2659683
Alignment:
Q  184 gattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaata 253  Q
    |||||||||||||| || ||||| || |||||||||||||||||||| ||||||||||||  ||||||||    
T  2659752 gattctccaatcccttcaattttctctacttctaccgttgttacacaaacacaactttacattcctaata 2659683  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 2630771 - 2630843
Alignment:
Q  180 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaat 252  Q
    |||||||||||||||||| ||| |||| || ||||| ||| ||||| |||| |||||||||||||||||||||    
T  2630771 gtatgattctccaatcccttcgcttttttctacttcaaccattgttgcacaaacacaactttaccctcctaat 2630843  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 755367 - 755292
Alignment:
Q  74 attctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac 149  Q
    ||||||||||| ||||||||| ||||||||| || || |||||||| ||||| ||||||||| |||||||| ||||    
T  755367 attctcttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccaccacctcatgttaac 755292  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 7325120 - 7325065
Alignment:
Q  86 ctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctc 141  Q
    ||||||| || ||||||||||| || |||||||||||||||||||||||| |||||    
T  7325120 ctgatcccactttcgcaaagaaacatcttcaattatcaactaagcgccaccacctc 7325065  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 9566557 - 9566482
Alignment:
Q  74 attctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac 149  Q
    ||||||||||| ||||||||| ||||||||| || || |||||||| ||||| ||||||||  |||||||| ||||    
T  9566557 attctcttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccatcacctcatgttaac 9566482  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 755246 - 755176
Alignment:
Q  183 tgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaata 253  Q
    |||||| |||||||| || ||||| || |||||||| ||| ||||||| ||||||||||||||||| ||||    
T  755246 tgattccccaatcccatccattttttctacttctactgtttttacacagacacaactttaccctcccaata 755176  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 9566432 - 9566378
Alignment:
Q  199 tcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaata 253  Q
    ||||||||||| |||||||| ||| ||||||| ||||||||||||||||| ||||    
T  9566432 tcgattttatctacttctacggtttttacacagacacaactttaccctcccaata 9566378  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 2644972 - 2644902
Alignment:
Q  180 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctccta 250  Q
    ||||||||| |||||||| ||   ||| || ||||||||| |||||||||| ||||||||||||| |||||    
T  2644972 gtatgattccccaatcccttcacctttttctacttctaccattgttacacaaacacaactttaccttccta 2644902  T

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