View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_low_17 (Length: 270)
Name: NF1726_low_17
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 41748709 - 41748864
Alignment:
| Q |
13 |
aatattgagtaagtaactgatactgttctatagtagtagtaacatataattgctgcatccatttaataatgttgtatcaataacaggagtaagtaaccga |
112 |
Q |
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| T |
41748709 |
aatattgagtaagtaactgatactgttctatagtagtagtaacata--attgctgcatccatttaataatgttgtatcaataacaggagtaagtaaccga |
41748806 |
T |
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| Q |
113 |
ctaccactatggtgtttgtcaaagaaaatactttaaggctatgtttggatagagggaa |
170 |
Q |
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| T |
41748807 |
ctaccactatggtgtttgtcaaagaaactactataaggttatgtttggattgagggaa |
41748864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 41748905 - 41748983
Alignment:
| Q |
177 |
ggaataaattataacatatttataccatttttacccttgtttaaaaacacactatattattatgtaaaacatcttattg |
255 |
Q |
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| T |
41748905 |
ggaataaattataacatatttatatcatttttacccttgtttaaaaacacactatattattatgtaaaacatcttattg |
41748983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 20307758 - 20307713
Alignment:
| Q |
177 |
ggaataaattataacatatttataccatttttacccttgtttaaaa |
222 |
Q |
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| T |
20307758 |
ggaataaattataacatttttattccatttttacccttggttaaaa |
20307713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 21094391 - 21094346
Alignment:
| Q |
177 |
ggaataaattataacatatttataccatttttacccttgtttaaaa |
222 |
Q |
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| T |
21094391 |
ggaataaattataacatttttattccatttttacccttggttaaaa |
21094346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 44605928 - 44605883
Alignment:
| Q |
177 |
ggaataaattataacatatttataccatttttacccttgtttaaaa |
222 |
Q |
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||||||||||||||||| ||||| ||||||||||||||| |||||| |
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| T |
44605928 |
ggaataaattataacatttttattccatttttacccttggttaaaa |
44605883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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