View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1726_low_18 (Length: 254)

Name: NF1726_low_18
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1726_low_18
NF1726_low_18
[»] chr6 (2 HSPs)
chr6 (113-221)||(30921582-30921688)
chr6 (138-197)||(19109601-19109660)
[»] chr8 (7 HSPs)
chr8 (117-221)||(33231109-33231211)
chr8 (111-221)||(41456049-41456157)
chr8 (138-197)||(2623253-2623312)
chr8 (146-211)||(13231841-13231904)
chr8 (135-197)||(278951-279013)
chr8 (135-197)||(636839-636901)
chr8 (135-197)||(822642-822704)
[»] chr3 (3 HSPs)
chr3 (172-239)||(49894182-49894248)
chr3 (130-218)||(45005507-45005593)
chr3 (137-197)||(45146695-45146755)
[»] chr2 (3 HSPs)
chr2 (111-197)||(38356835-38356921)
chr2 (143-217)||(35064403-35064475)
chr2 (113-209)||(40056313-40056407)
[»] chr1 (2 HSPs)
chr1 (130-197)||(28651699-28651766)
chr1 (130-196)||(25476089-25476155)
[»] chr4 (3 HSPs)
chr4 (111-211)||(12007452-12007550)
chr4 (112-197)||(12007921-12008006)
chr4 (112-209)||(32641167-32641262)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 30921688 - 30921582
Alignment:
Q  113 gggataattacacccaactcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctcccttttaagttctcatcat 212  Q
    ||||| |||||||||| ||||| | |  ||||||||||||||||||| || ||||||| |||||||||||||||||| |||||  ||||||||| |||||    
T  30921688 gggatgattacacccacctcccctaaaatctattaaaatgacactaaaatcccctctagttttaaaacatacaataaactccc--ttaagttctaatcat 30921591  T
Q  213 atagactaa 221  Q
    |||||||||    
T  30921590 atagactaa 30921582  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 19109660 - 19109601
Alignment:
Q  138 aggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccctt 197  Q
    |||||||| ||||| ||| | |||| ||||||| ||||||||| ||||||||||||||||    
T  19109660 aggtctatcaaaataacattgacatcccctctatttttaaaacttacaataacctccctt 19109601  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 33231109 - 33231211
Alignment:
Q  117 taattacacccaactcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctcccttttaagttctcatcatatag 216  Q
    ||||||||| || ||||  | ||||||||||||||||||||| ||| ||||||||||||||||||| ||  |||||||||||  |||| |||||||||||    
T  33231109 taattacacacacctcctctaaggtctattaaaatgacactagcatcccctctaattttaaaacatgcataaacctcccttt--agttttcatcatatag 33231206  T
Q  217 actaa 221  Q
    |||||    
T  33231207 actaa 33231211  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 41456157 - 41456049
Alignment:
Q  111 tagggataattacacccaactcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctcccttttaagttctcatc 210  Q
    ||||||||||||||| || ||||| |||||||||| ||||||||||| ||||  ||||||||||| |||| |||| |||||||||  |||||||||| |     
T  41456157 tagggataattacactcacctcccctgaggtctatgaaaatgacactgacatctcctctaatttttaaacttacactaacctccc--ttaagttctcgta 41456060  T
Q  211 atatagactaa 221  Q
    | |||||||||    
T  41456059 aaatagactaa 41456049  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 2623312 - 2623253
Alignment:
Q  138 aggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccctt 197  Q
    |||| ||||||||||||||| |||| || |||||||||||||| |||| |||||||||||    
T  2623312 aggtttattaaaatgacactgacatcccatctaattttaaaacttacactaacctccctt 2623253  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 13231904 - 13231841
Alignment:
Q  146 taaaatgacactaacattccctctaattttaaaacatacaataacctcccttttaagttctcatca 211  Q
    |||||||||||| |||  ||||||||||||||||| |||| ||||||||||||  |||||||||||    
T  13231904 taaaatgacactgacaccccctctaattttaaaacttacactaacctcccttt--agttctcatca 13231841  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 278951 - 279013
Alignment:
Q  135 gtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccctt 197  Q
    |||||||||||||| |||||||| |||| |||| || ||||||||| |||| ||| |||||||    
T  278951 gtgaggtctattaagatgacactgacatcccctttagttttaaaacttacattaatctccctt 279013  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 636901 - 636839
Alignment:
Q  135 gtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccctt 197  Q
    |||||||||||||| |||||||| |||| |||| || ||||||||| |||| ||| |||||||    
T  636901 gtgaggtctattaagatgacactgacatcccctttagttttaaaacttacattaatctccctt 636839  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 822704 - 822642
Alignment:
Q  135 gtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccctt 197  Q
    |||||||||||||| |||||||| |||| |||| || ||||||||| |||| ||| |||||||    
T  822704 gtgaggtctattaagatgacactgacatcccctttagttttaaaacttacattaatctccctt 822642  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 49894248 - 49894182
Alignment:
Q  172 ttttaaaacatacaataacctcccttttaagttctcatcatatagactaatgttaacat-gttaatctt 239  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  49894248 ttttaaaacatacaataacctccctt--aagttctcatcatatagactaatgttaacatcgttaatctt 49894182  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 45005593 - 45005507
Alignment:
Q  130 ctcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctcccttttaagttctcatcatatagac 218  Q
    ||||| |||||| ||||||||||||||||||||| || ||| |||||||||  ||| | | |||||  |||||||||||||| ||||||    
T  45005593 ctcccttgaggtttattaaaatgacactaacatttccactagttttaaaactcacactgatctccc--ttaagttctcatcaaatagac 45005507  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 45146755 - 45146695
Alignment:
Q  137 gaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccctt 197  Q
    ||||| |||||||||||||| ||||| || ||||||||||||||  ||| |||||||||||    
T  45146755 gaggtttattaaaatgacacaaacatcccttctaattttaaaactaacactaacctccctt 45146695  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 38356835 - 38356921
Alignment:
Q  111 tagggataattacacccaactcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccctt 197  Q
    |||||| |||||||| || ||||| ||||||||||||| ||||||| ||||  ||||||| |||||||||||||| |||||||||||    
T  38356835 tagggaaaattacactcacctcccctgaggtctattaatatgacacaaacaccccctctagttttaaaacatacattaacctccctt 38356921  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 35064475 - 35064403
Alignment:
Q  143 tattaaaatgacactaacattccctctaattttaaaacatacaataacctcccttttaagttctcatcatataga 217  Q
    |||||||||||||||||||| ||||||| |||||||||  ||| |||| ||||  |||| ||||||||| |||||    
T  35064475 tattaaaatgacactaacatcccctctagttttaaaactcacactaacttccc--ttaaattctcatcaaataga 35064403  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 40056313 - 40056407
Alignment:
Q  113 gggataattacacccaactcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctcccttttaagttctcat 209  Q
    |||| |||||||| || ||||  |||||| ||| |||||||||||||||  || |||| ||| ||||| |||| |||||||||  ||||||||||||    
T  40056313 gggaaaattacactcacctccgctgaggtttatgaaaatgacactaacaccccttctagtttcaaaacttacattaacctccc--ttaagttctcat 40056407  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 28651699 - 28651766
Alignment:
Q  130 ctcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccctt 197  Q
    ||||| |||||||||||||||||||||| |||  ||||||| ||||||||| |||| |||||||||||    
T  28651699 ctcccctgaggtctattaaaatgacactgacaccccctctatttttaaaacttacattaacctccctt 28651766  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 25476155 - 25476089
Alignment:
Q  130 ctcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccct 196  Q
    ||||| |||||| ||||||||||||||| ||| |||||||| ||||||||| ||||  |||||||||    
T  25476155 ctcccctgaggtttattaaaatgacactgacactccctctagttttaaaacttacacgaacctccct 25476089  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 12007452 - 12007550
Alignment:
Q  111 tagggataattacacccaactcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctcccttttaagttctcatc 210  Q
    |||||| ||||||||| | ||||| |  ||| || |||||||||||| |||  ||||||| |||||||||||||| ||||||| |  |||||||||||||    
T  12007452 tagggaaaattacaccaacctcccctatggtttactaaaatgacactgacaccccctctagttttaaaacatacattaacctcac--ttaagttctcatc 12007549  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 12008006 - 12007921
Alignment:
Q  112 agggataattacacccaactcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctccctt 197  Q
    ||||| |||||||| || ||||| | || | || |||||||||||| |||  ||||||||||||||||| |||| |||||||||||    
T  12008006 agggaaaattacacacacctcccctaagatttactaaaatgacactgacaccccctctaattttaaaacttacactaacctccctt 12007921  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 32641167 - 32641262
Alignment:
Q  112 agggataattacacccaactcccgtgaggtctattaaaatgacactaacattccctctaattttaaaacatacaataacctcccttttaagttctcat 209  Q
    ||||||||||||||||| ||| | ||| ||||||  |||||||||| |||   |||||||||||||||  |||| |||| ||||  ||||||||||||    
T  32641167 agggataattacacccacctctcctgaagtctatgtaaatgacactgacacctcctctaattttaaaaattacactaacatccc--ttaagttctcat 32641262  T

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