View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_low_20 (Length: 243)
Name: NF1726_low_20
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_low_20 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31158850 - 31159089
Alignment:
| Q |
1 |
gaacaacgattagcacatctcaatttattttcaccactcttttggttacaggaagttgatcaaagtattgcagcacaaattgaaacgctaaaaaacaatg |
100 |
Q |
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| T |
31158850 |
gaacaacgattagcacatctcaatttattttcaccactcttttggttacaggaagttgatcaaagtattgcagcacaaattgaaacgctaaaaaacaatg |
31158949 |
T |
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| Q |
101 |
tgagggacatgcttgtctcaaacaccaagaatcccttggaaaaagtgcacttaattgattcaatatgtcgtttgggtgtgagctatcattttgaaaatga |
200 |
Q |
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| T |
31158950 |
tgagggacatgcttgtctcaaacaccaagaatcccttggaaaaagtgcacttaattgattcaatatgtcgtttgggtgtgagctatcattttgaaaatga |
31159049 |
T |
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| Q |
201 |
gattgaagtggttttgcaaaatatacacaagaattatgtt |
240 |
Q |
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| T |
31159050 |
gattgaagaggttttgcaacatattcataagaattatgtt |
31159089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 41352425 - 41352229
Alignment:
| Q |
49 |
caggaagttgatcaaagtattgcagcacaaattgaaacgctaaaaaacaatgtgagggacatgcttgtctcaaacaccaagaatcccttggaaaaagtgc |
148 |
Q |
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| T |
41352425 |
caggaacttgatcaaaatatggtagcacgaattgagacactaaaaaccgatgtgaagaacatgcttgtttctaagactgagatgcccttggcaaaaatcc |
41352326 |
T |
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| Q |
149 |
acttaattgattcaatatgtcgtttgggtgtgagctatcattttgaaaatgagattgaagtggttttgcaaaatata--cacaagaattatgttgaa |
243 |
Q |
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| T |
41352325 |
acttgattgattcaatatgtcgtttgggaataagctatcattttgaacatgagattgaagaggttttgctacatatattcacaataattatgttgaa |
41352229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 31198261 - 31198457
Alignment:
| Q |
47 |
tacaggaagttgatcaaagtattgcagcacaaattgaaacgctaaaaaacaatgtgagggacatgcttgtctcaaacacca---agaatcccttggaaaa |
143 |
Q |
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| T |
31198261 |
tacaggaacatgatcaaagtattgctgcacaaattgagacactaaaaaacgatgtgaggaagatacttgatataaagaatattgagaagtcattggcaac |
31198360 |
T |
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| Q |
144 |
agtgcacttaattgattcaatatgtcgtttgggtgtgagctatcattttgaaaatgagattgaagtggttttgcaaaatatacacaagaattatgtt |
240 |
Q |
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| T |
31198361 |
agtccacttgattgattcaatatgccgcttgggtgtgagttatcactttgaaaaggagattgaagaggttttgcaacatattcataagaattatgtt |
31198457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 25832071 - 25832147
Alignment:
| Q |
154 |
attgattcaatatgtcgtttgggtgtgagctatcattttgaaaatgagattgaagtggttttgcaaaatatacacaa |
230 |
Q |
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| T |
25832071 |
attgattcaatatgtcgtctcggtgttagttatcattttgaaaacgagattgacgaagttttgcaacatattcacaa |
25832147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 25791863 - 25792028
Alignment:
| Q |
75 |
acaaattgaaacgctaaaaaacaatgtgagggacatgcttgtctcaaacaccaagaatcccttggaaaaagtgcacttaattgattcaatatgtcgtttg |
174 |
Q |
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| T |
25791863 |
acaaattgaaaccctaaaaaccgacgtgagaaagatgcttgtctcaaagagtgagaaacccttggcaaaagttcatttgattgattcgatatgccgtttg |
25791962 |
T |
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| Q |
175 |
ggtgtgagctatcattttgaaaatgagattgaagtggttttgcaaaatatacacaagaattatgtt |
240 |
Q |
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| T |
25791963 |
ggtttgaactatcattttgaagatgagattgatgagattttgcaagatattcacaagaattatgtt |
25792028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 206
Target Start/End: Original strand, 17179144 - 17179276
Alignment:
| Q |
74 |
cacaaattgaaacgctaaaaaacaatgtgagggacatgcttgtctcaaacaccaagaatcccttggaaaaagtgcacttaattgattcaatatgtcgttt |
173 |
Q |
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| T |
17179144 |
cacaaattgaatcactaaaaaaggaagtgaggaacatgattgtctcaaagattgagaatccctttgcaaaagttcatttgattgattcaatatgtcgttt |
17179243 |
T |
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| Q |
174 |
gggtgtgagctatcattttgaaaatgagattga |
206 |
Q |
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| T |
17179244 |
gggtgtgaactatcattttcaacatgaaattga |
17179276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 2326159 - 2326253
Alignment:
| Q |
149 |
acttaattgattcaatatgtcgtttgggtgtgagctatcattttgaaaatgagattgaagtggttttgcaaaatatacacaagaattatgttgaa |
243 |
Q |
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| T |
2326159 |
acttaattgattcgatatgtcgtttgggtgtgagctatcattacgaaaatgagattgatgaagttatgcaatacattcacaagagctatgttgaa |
2326253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 14267803 - 14267739
Alignment:
| Q |
155 |
ttgattcaatatgtcgtttgggtgtgagctatcattttgaaaatgagattgaagtggttttgcaa |
219 |
Q |
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| T |
14267803 |
ttgattcaatatgtcgtttgggtgtgagttatcactttgaaaaagaaattgatgatgttttgcaa |
14267739 |
T |
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