View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1726_low_21 (Length: 236)
Name: NF1726_low_21
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36676315 - 36676095
Alignment:
| Q |
1 |
tgcatgagtgccattaatagtcatttggcacttggagaagaatgatgaatagcagttatcttcttgttgtcttgtacagtagcattactcatgccaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36676315 |
tgcatgagtgccattaatagtcatttggcacttggagaagaatgatcaatagcagttatcttcttgttgtcttggacagtagcattactcatgccaacta |
36676216 |
T |
|
| Q |
101 |
ccacttctgacagattcatctctccttttccattattcttccttgctgctatctgttcttgggttgacttgtaatatgatgcatatagaatcaattgtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36676215 |
ccacttctgacagattcatctctccttttccattattcttccttgctgctatctgttcttgggttgacttgtaatatgatgcatatagaatcaattgtac |
36676116 |
T |
|
| Q |
201 |
taccgcaaacattgtcccaat |
221 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36676115 |
caccgcaaacattgtcccaat |
36676095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36686397 - 36686177
Alignment:
| Q |
1 |
tgcatgagtgccattaatagtcatttggcacttggagaagaatgatgaatagcagttatcttcttgttgtcttgtacagtagcattactcatgccaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36686397 |
tgcatgagtgccattaatagtcatttggcacttggagaagaatgatcaatagcagttatcttcttgttgtcttggacagtagcattactcatgccaacta |
36686298 |
T |
|
| Q |
101 |
ccacttctgacagattcatctctccttttccattattcttccttgctgctatctgttcttgggttgacttgtaatatgatgcatatagaatcaattgtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36686297 |
ccacttctgacagattcatctctccttttccattattcttccttgctgctatctgttcttgggttgacttgtaatatgatgcatatagaatcaattgtac |
36686198 |
T |
|
| Q |
201 |
taccgcaaacattgtcccaat |
221 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36686197 |
caccgcaaacattgtcccaat |
36686177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University