View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1726_low_25 (Length: 222)

Name: NF1726_low_25
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1726_low_25
NF1726_low_25
[»] chr7 (14 HSPs)
chr7 (1-222)||(19399834-19400055)
chr7 (1-222)||(27387404-27387625)
chr7 (1-222)||(26493812-26494033)
chr7 (1-222)||(38575387-38575608)
chr7 (4-99)||(45197623-45197717)
chr7 (3-78)||(23179985-23180060)
chr7 (1-78)||(8638614-8638691)
chr7 (1-78)||(43727996-43728073)
chr7 (1-63)||(9230416-9230478)
chr7 (7-63)||(18375421-18375477)
chr7 (28-78)||(23804623-23804673)
chr7 (89-119)||(41596633-41596663)
chr7 (90-123)||(37126544-37126577)
chr7 (91-123)||(31421879-31421911)
[»] chr1 (13 HSPs)
chr1 (1-222)||(17127295-17127516)
chr1 (1-222)||(21973886-21974107)
chr1 (3-78)||(48606712-48606787)
chr1 (1-87)||(26273027-26273113)
chr1 (1-78)||(30559103-30559180)
chr1 (1-78)||(9637121-9637198)
chr1 (1-78)||(25017386-25017463)
chr1 (1-53)||(35949076-35949128)
chr1 (1-78)||(52753915-52753992)
chr1 (3-78)||(40864819-40864894)
chr1 (3-52)||(30054847-30054896)
chr1 (1-53)||(14498922-14498974)
chr1 (1-78)||(32379953-32380027)
[»] chr3 (14 HSPs)
chr3 (1-222)||(31988885-31989106)
chr3 (4-222)||(24908494-24908712)
chr3 (1-222)||(53710254-53710475)
chr3 (1-219)||(43136986-43137204)
chr3 (1-222)||(37381967-37382188)
chr3 (1-78)||(15667973-15668050)
chr3 (4-59)||(43585836-43585891)
chr3 (1-75)||(3856974-3857048)
chr3 (1-78)||(51261979-51262056)
chr3 (89-119)||(22509780-22509810)
chr3 (91-123)||(2736510-2736542)
chr3 (90-122)||(8425462-8425494)
chr3 (91-123)||(22126655-22126687)
chr3 (91-123)||(40925556-40925588)
[»] chr4 (10 HSPs)
chr4 (1-222)||(27364739-27364960)
chr4 (1-222)||(55464758-55464979)
chr4 (116-208)||(20114436-20114528)
chr4 (1-79)||(12211324-12211402)
chr4 (1-78)||(31944616-31944693)
chr4 (1-99)||(42843686-42843784)
chr4 (1-78)||(4325412-4325489)
chr4 (1-78)||(53693132-53693209)
chr4 (89-119)||(14461554-14461584)
chr4 (90-123)||(55404942-55404975)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-222)||(214259-214480)
[»] chr8 (13 HSPs)
chr8 (1-222)||(21958368-21958589)
chr8 (1-222)||(30791556-30791777)
chr8 (1-140)||(16532729-16532868)
chr8 (116-208)||(10396460-10396552)
chr8 (1-78)||(13152492-13152569)
chr8 (1-77)||(27190772-27190848)
chr8 (1-63)||(9256404-9256466)
chr8 (1-78)||(24333714-24333791)
chr8 (1-76)||(14446834-14446909)
chr8 (1-61)||(42446935-42446995)
chr8 (1-78)||(28846621-28846695)
chr8 (1-53)||(10467789-10467841)
chr8 (91-123)||(42809539-42809571)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-222)||(134952-135173)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-222)||(15670-15891)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-222)||(196961-197182)
[»] chr5 (11 HSPs)
chr5 (1-222)||(26540753-26540974)
chr5 (1-151)||(203778-203927)
chr5 (1-121)||(1280335-1280455)
chr5 (1-78)||(3055482-3055559)
chr5 (1-63)||(11852730-11852792)
chr5 (1-59)||(22541905-22541963)
chr5 (1-78)||(8785782-8785859)
chr5 (3-41)||(27168903-27168941)
chr5 (1-78)||(23244668-23244745)
chr5 (89-119)||(14009483-14009513)
chr5 (90-124)||(38395282-38395316)
[»] chr2 (14 HSPs)
chr2 (1-222)||(22483405-22483626)
chr2 (1-222)||(34526208-34526429)
chr2 (1-219)||(22464529-22464747)
chr2 (1-222)||(35649758-35649977)
chr2 (1-219)||(33453286-33453504)
chr2 (116-200)||(39368371-39368455)
chr2 (1-78)||(12539574-12539650)
chr2 (1-78)||(34317565-34317642)
chr2 (1-87)||(19951929-19952015)
chr2 (1-49)||(13308745-13308793)
chr2 (89-119)||(12055221-12055251)
chr2 (89-119)||(43525239-43525269)
chr2 (90-123)||(5088594-5088627)
chr2 (90-123)||(9844966-9844999)
[»] chr6 (7 HSPs)
chr6 (1-220)||(24074270-24074489)
chr6 (2-78)||(12180624-12180700)
chr6 (1-74)||(11970964-11971037)
chr6 (1-39)||(3050902-3050940)
chr6 (1-58)||(25599172-25599229)
chr6 (1-78)||(25340445-25340522)
chr6 (90-122)||(10895207-10895239)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-222)||(259774-259995)
[»] scaffold0178 (1 HSPs)
scaffold0178 (5-78)||(17740-17813)
[»] scaffold0002 (1 HSPs)
scaffold0002 (3-78)||(435450-435530)
[»] scaffold0198 (1 HSPs)
scaffold0198 (1-44)||(1430-1473)
[»] scaffold0024 (1 HSPs)
scaffold0024 (90-124)||(12041-12075)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19400055 - 19399834
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  19400055 tcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttgataatct 19399956  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19399955 tcattgttgaaaaagctctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 19399856  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  19399855 aggttgaaccatcttcatagcc 19399834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27387404 - 27387625
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  27387404 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttaataatct 27387503  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27387504 tcattgctgaaaaagctctttcaacggaagctgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 27387603  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  27387604 agtttgaaccatcttcatagcc 27387625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26493812 - 26494033
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  26493812 tcatcaagtgacttgaatatctcccgctcggtgtaacgtatcatcaagtcatttaaccacacattgttcatcttgttgcgcaatttagtcttgataatct 26493911  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26493912 tcattgctgaaaaagctctttcaacggatgctgtcgacaccggcaatatcaaagtcaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 26494011  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  26494012 agtttgaaccatcttcatagcc 26494033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38575387 - 38575608
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||| |||| |||||||    
T  38575387 tcatcaagtgactttaatatctcccgctcggtgtaacatatcatcaagtcgttcaaccacccattgttgatattgttgcgcaatttagtcttaataatct 38575486  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    |||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38575487 tcattgttgaaaaagctctttcaacggaagctgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 38575586  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  38575587 agtttgaaccatcttcatagcc 38575608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 45197717 - 45197623
Alignment:
Q  4 tcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatc 99  Q
    ||||||||||||||||||||||||||| || || |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||    
T  45197717 tcaagtgacttgaatatctcctgctcgatg-aatatatcatcaagtcattgaaccacacattgttgatcttgttgcgcaatttaatcttgataatc 45197623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 23179985 - 23180060
Alignment:
Q  3 atcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||| ||| || ||||||  |||||||||||||    
T  23179985 atcaagtgccttgaatatctctcgctcggtgtaacatatcatcaagttattgaaacacacatcgttgatcttgttg 23180060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8638691 - 8638614
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||| ||||||||||||||| || ||||| |||||||||||||||| ||| ||||||||   |||||||||||||    
T  8638691 tcatcaaatgacttgaatatctcttgttcggtataacatatcatcaagtaattaaaccacacgtcgttgatcttgttg 8638614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43728073 - 43727996
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||| |||||||||||||||| | ||| | |||||||||||||||||||| |||||||||  ||||||| |||||    
T  43728073 tcatcaactgacttgaatatctcccgttcgatataacatatcatcaagtcattgaaccacacatcgttgatcatgttg 43727996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9230478 - 9230416
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacaca 63  Q
    ||||||| |||||||| ||||||| ||||  |||||||||||||||||||||| |||||||||    
T  9230478 tcatcaaatgacttgagtatctcccgctctatgtaacatatcatcaagtcattgaaccacaca 9230416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 18375477 - 18375421
Alignment:
Q  7 agtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacaca 63  Q
    ||||| |||||||||||| ||||  ||||| |||||||||||||||| |||||||||    
T  18375477 agtgatttgaatatctcccgctccatgtaatatatcatcaagtcattgaaccacaca 18375421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 23804623 - 23804673
Alignment:
Q  28 tcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||||| |||||| ||||||||| |||||||||  |||||||||||||    
T  23804623 tcggtgtaatatatcaacaagtcattgaaccacacatcgttgatcttgttg 23804673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Complemental strand, 41596663 - 41596633
Alignment:
Q  89 tcttgataatcttcattgctgaaaaagatct 119  Q
    |||||||||||||||||||||||||||||||    
T  41596663 tcttgataatcttcattgctgaaaaagatct 41596633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 37126577 - 37126544
Alignment:
Q  90 cttgataatcttcattgctgaaaaagatctttca 123  Q
    ||||||||| ||||||||||||||||||||||||    
T  37126577 cttgataattttcattgctgaaaaagatctttca 37126544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 31421911 - 31421879
Alignment:
Q  91 ttgataatcttcattgctgaaaaagatctttca 123  Q
    |||||||| ||||||||||||||||||||||||    
T  31421911 ttgataattttcattgctgaaaaagatctttca 31421879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17127516 - 17127295
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  17127516 tcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttgataatct 17127417  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17127416 tcattgttgaaaaagctctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 17127317  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  17127316 aggttgaaccatcttcatagcc 17127295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21973886 - 21974107
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||| ||||| |||||| || |||| |||||||||| ||||||| ||||||||||||    
T  21973886 tcatcaagtgatttgaatatctcccgctcagtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcacaatttagtcttgataatct 21973985  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21973986 tcattgctgaaaaagctctttcaacggatgctgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 21974085  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  21974086 agtttgaaccatcttcatagcc 21974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 48606712 - 48606787
Alignment:
Q  3 atcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  48606712 atcaagttacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 48606787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26273027 - 26273113
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaattta 87  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||||  |||||| |||||||||||||||    
T  26273027 tcatcacgtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacacatcgttgattttgttgcgcaattta 26273113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30559103 - 30559180
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||  |||||||||||||    
T  30559103 tcatcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagtcatagaaccacacatcgttgatcttgttg 30559180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9637198 - 9637121
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||   ||||||||||||    
T  9637198 tcatcaagtgacttgaatatcacccgctcggtgtaacatatcatcaagtcattgaaccacgcatcattgatcttgttg 9637121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25017463 - 25017386
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||||||| |||||||||||  ||||||||||| |||||||||||||||| |||||||||  |||||||||||||    
T  25017463 tcatcaagtgatttgaatatctctcgctcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 25017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35949076 - 35949128
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcatt 53  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35949076 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatt 35949128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 52753915 - 52753992
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||| |||||||||||||||| | ||| |||||||||||||||||||||| |||||||||  ||||||| |||||    
T  52753915 tcatcaaatgacttgaatatctcccgttcgatgtaacatatcatcaagtcattgaaccacacatcgttgatcatgttg 52753992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 40864819 - 40864894
Alignment:
Q  3 atcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||||||||||||||| |  | ||||||||| |||||||||||||||| |||||||||  |||||||||||||    
T  40864819 atcaagtgacttgaatatccctcgttcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 40864894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 30054896 - 30054847
Alignment:
Q  3 atcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcat 52  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  30054896 atcaagtgacttgaatatctcccgctcggtgtaacatatcattaagtcat 30054847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14498974 - 14498922
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcatt 53  Q
    ||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  14498974 tcatcaaatgacttgaatatctcccgctcgatgtaagatatcatcaagtcatt 14498922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32379953 - 32380027
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||||||| |||||||||||| | | ||||||||||   ||||||||||| |||||||||  |||||||||||||    
T  32379953 tcatcaagtgaattgaatatctcccgtttggtgtaacat---atcaagtcattgaaccacacatcgttgatcttgttg 32380027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31989106 - 31988885
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  31989106 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttaataatct 31989007  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31989006 tcattgctgaaaaagctctttcaacggaagctgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 31988907  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  31988906 agtttgaaccatcttcatagcc 31988885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 24908494 - 24908712
Alignment:
Q  4 tcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatcttca 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24908494 tcaagcgacttgaatatctcctgcttggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttactcttgataatcttca 24908593  T
Q  104 ttgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctcaga 203  Q
    |||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  24908594 ttgctgaaaaagctctttcaacgaaagttgtcgacacaagcaatatcaaagccaactcaatgagtttgtaaaccaatggaaataccaaatgtttctcagt 24908693  T
Q  204 ttgaaccatcttcatagcc 222  Q
    |||||||||||||||||||    
T  24908694 ttgaaccatcttcatagcc 24908712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53710475 - 53710254
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||||||    
T  53710475 tcatcaagtgacttgaatatctcccgctcggtgtaacagatcatcaagtcattcaaccatccattgttgatcttgttgcgcaatttagtcttgataatct 53710376  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53710375 tcattgctgaaaaagctctttcaacggatgctgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 53710276  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  53710275 agtttgaaccatcttcatagcc 53710254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 43137204 - 43136986
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||  ||||||||||||||||||||||   ||||||||||    
T  43137204 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccatacatcgttgatcttgttgcgcaatttagagttgataatct 43137105  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    |||||||| |||||| |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43137104 tcattgctaaaaaagctctttcaacggatgttgtcgatacaggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 43137005  T
Q  201 agattgaaccatcttcata 219  Q
       ||||||||||||||||    
T  43137004 gttttgaaccatcttcata 43136986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37381967 - 37382188
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||| ||||||||||||||| ||||| |||||| |||||||| ||||||| |||||||||  ||||||||||||||| ||||||  |||||||||||    
T  37381967 tcatcaaatgacttgaatatctcatgctcagtgtaatatatcatcgagtcatttaaccacacatcgttgatcttgttgcgaaatttagacttgataatct 37382066  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  37382067 tcattgctgaaaaagctctttcaacggatgttgtcgacaccgacaataccaaagccaactcaatgagtttgtagaccaatgaaaataccaaatgattctc 37382166  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  37382167 agtttgaaccatcttcatagcc 37382188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 15668050 - 15667973
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||   ||||||||||||    
T  15668050 tcatcaagtgacttgaatatctcccgctcggtataacatatcatcaagttattgaaccacacatccttgatcttgttg 15667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 43585891 - 43585836
Alignment:
Q  4 tcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaacca 59  Q
    |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  43585891 tcaagtaacttggatatctcccgctcggtgtaacatatcatcaagtcattcaacca 43585836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3856974 - 3857048
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttg 75  Q
    ||||||| ||||||||||||||||  ||| | ||||||| ||||||||||||| |||||||||  ||||||||||    
T  3856974 tcatcaaatgacttgaatatctcccactctgagtaacatgtcatcaagtcatttaaccacacatcgttgatcttg 3857048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 51262056 - 51261979
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||||||||||||||| | |||  ||||||||||||||||| |||||  |||||||   |||||||||||||    
T  51262056 tcatcaagtgacttgaatatcttccgcttagtgtaacatatcatcaattcattgtaccacacttcgttgatcttgttg 51261979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Original strand, 22509780 - 22509810
Alignment:
Q  89 tcttgataatcttcattgctgaaaaagatct 119  Q
    |||||||||||||||||||||||||||||||    
T  22509780 tcttgataatcttcattgctgaaaaagatct 22509810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 2736542 - 2736510
Alignment:
Q  91 ttgataatcttcattgctgaaaaagatctttca 123  Q
    |||||||| ||||||||||||||||||||||||    
T  2736542 ttgataattttcattgctgaaaaagatctttca 2736510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 8425462 - 8425494
Alignment:
Q  90 cttgataatcttcattgctgaaaaagatctttc 122  Q
    ||||||||| |||||||||||||||||||||||    
T  8425462 cttgataattttcattgctgaaaaagatctttc 8425494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 22126655 - 22126687
Alignment:
Q  91 ttgataatcttcattgctgaaaaagatctttca 123  Q
    |||||||| ||||||||||||||||||||||||    
T  22126655 ttgataattttcattgctgaaaaagatctttca 22126687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 40925588 - 40925556
Alignment:
Q  91 ttgataatcttcattgctgaaaaagatctttca 123  Q
    |||||||| ||||||||||||||||||||||||    
T  40925588 ttgataattttcattgctgaaaaagatctttca 40925556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27364960 - 27364739
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  27364960 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccacacactgttgatcttgttgcgcaatttagtcttgataatct 27364861  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27364860 tcattgctgaaaaagctctttcaacggatgttgtcgacactgacaatatcaaagccaactcaatgagtttgtagaccaatgaaaataccaaatgtttctc 27364761  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  27364760 agtttgaaccatcttcatagcc 27364739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 55464758 - 55464979
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  55464758 tcatcaagtgacttgattttctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttgataatct 55464857  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||    
T  55464858 tcattgctgaaaaagctctttcaacggaagttgttgacaccgacaatatcaaagccaacttaatgagtttgtagaccaatggaattaccaaatgttactc 55464957  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  55464958 agtttgaaccatcttcatagcc 55464979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 20114528 - 20114436
Alignment:
Q  116 atctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctcagattgaa 208  Q
    ||||||||||||| |||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  20114528 atctttcaacggatgttgtcaacaccgacaatatcaaagccaactcaatgagtttgtagaccaatgaaaatatcaaatgtttctcagtttgaa 20114436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12211324 - 12211402
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgc 79  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  12211324 tcatcaaatgacttgaatatctcctgttcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttgc 12211402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31944693 - 31944616
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  31944693 tcatcaagtgacttgaatatctcacactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 31944616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 42843784 - 42843686
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatc 99  Q
    |||||||||||||||||||||||   |||  | |||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||| |||| ||||||    
T  42843784 tcatcaagtgacttgaatatctctcactcaatataacatatcatcaactcattaaaccacacattgttgatcttgttgcacaatttagtcttaataatc 42843686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4325489 - 4325412
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||||||  |||| |||||||  ||||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  4325489 tcatcaagtgggttgattatctcccactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 4325412  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 53693132 - 53693209
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||| ||||| ||||||| ||||| |||||||||||||||||||||| |||||||||  ||||||| |||||    
T  53693132 tcatcaagtgccttgattatctcccgctcgatgtaacatatcatcaagtcattgaaccacacaccgttgatcatgttg 53693209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Complemental strand, 14461584 - 14461554
Alignment:
Q  89 tcttgataatcttcattgctgaaaaagatct 119  Q
    |||||||||||||||||||||||||||||||    
T  14461584 tcttgataatcttcattgctgaaaaagatct 14461554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 55404975 - 55404942
Alignment:
Q  90 cttgataatcttcattgctgaaaaagatctttca 123  Q
    ||||||||| ||||||||||||||||||||||||    
T  55404975 cttgataattttcattgctgaaaaagatctttca 55404942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 214259 - 214480
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||    
T  214259 tcatcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgcgtaatttagtcttgataatct 214358  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  214359 tcattggtgaaaaagctctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgattttgtagaccaatggaaataccaaatgtttctt 214458  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  214459 agtttgaaccatcttcatagcc 214480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21958589 - 21958368
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||    
T  21958589 tcatcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgcgtaatttagtcttgataatct 21958490  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  21958489 tcattggtgaaaaagctctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgattttgtagaccaatggaaataccaaatgtttctt 21958390  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  21958389 agtttgaaccatcttcatagcc 21958368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30791556 - 30791777
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || | ||||||||||||||||||||| ||||||||||||    
T  30791556 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccactcattcttgatcttgttgcgcaatttaatcttgataatct 30791655  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||| ||| |  |||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  30791656 tcattgctgaaaaagctctttcaatggatgcagtcgacaccggcaatatcaaagccaactcaattaatttgtagaccaatggaaatgccaaatgtttctc 30791755  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  30791756 agtttgaaccatcttcatagcc 30791777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 16532729 - 16532868
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||   || ||| |||||||||||||||||||| |||||||||  ||||||||||||| | |||||| ||||||||||||    
T  16532729 tcatcaagtgacttgaatatctctcacttggtataacatatcatcaagtcattgaaccacacatcgttgatcttgttgtgtaatttagtcttgataatct 16532828  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacac 140  Q
    ||||||||||||||| |||||  ||||| |||||||||||    
T  16532829 tcattgctgaaaaagctctttacacggatgttgtcgacac 16532868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 10396460 - 10396552
Alignment:
Q  116 atctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctcagattgaa 208  Q
    ||||| ||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10396460 atcttccaacggatgttgtcaacaccgacaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctcagtttgaa 10396552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 13152492 - 13152569
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||| |||||    
T  13152492 tcatcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacagcgttgatcatgttg 13152569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27190848 - 27190772
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgtt 77  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||  ||||||||||||    
T  27190848 tcatcaagtgacttgaatatctcccgctaggtgcaacatatcatcaagtcattgaaccacacatcgttgatcttgtt 27190772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9256466 - 9256404
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacaca 63  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  9256466 tcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattaaaccacaca 9256404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 24333791 - 24333714
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||||| || || |||  |||||||||||||    
T  24333791 tcatcaagtgacttgaatatctcccgctcagtgtaacatatcataaagtcattgaatcatacatcgttgatcttgttg 24333714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14446909 - 14446834
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgt 76  Q
    |||||||||||||||||||||||   || |||||||||||||||||||||||| ||||||| |  |||||||||||    
T  14446909 tcatcaagtgacttgaatatctctctcttggtgtaacatatcatcaagtcattgaaccacaaatcgttgatcttgt 14446834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42446995 - 42446935
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccaca 61  Q
    |||||||||||||||||||||| | ||||| |||||||||| |||| ||||||||||||||    
T  42446995 tcatcaagtgacttgaatatcttccgctcgatgtaacatataatcacgtcattcaaccaca 42446935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28846695 - 28846621
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||||||||||||||||| ||||| ||||    |||||||||||||| |||||||||  |||||||||||||    
T  28846695 tcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttgatcttgttg 28846621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10467841 - 10467789
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcatt 53  Q
    ||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||    
T  10467841 tcatcaaatgacttgattatctcccgctcgatgtaacatatcatcaagtcatt 10467789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 42809571 - 42809539
Alignment:
Q  91 ttgataatcttcattgctgaaaaagatctttca 123  Q
    |||||||| ||||||||||||||||||||||||    
T  42809571 ttgataattttcattgctgaaaaagatctttca 42809539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 134952 - 135173
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||||||| ||||||| ||||||||||||    
T  134952 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccacacattgttcatcttgttgcacaatttagtcttgataatct 135051  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  135052 tcattgctgaaaaagctctttcaacggatgctgttgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 135151  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  135152 agtttgaaccatcttcatagcc 135173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15891 - 15670
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||| || |||| |||||||||||||||||| ||||||||||||    
T  15891 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 15792  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15791 tcattgctgaaaaagctctttcaacggatgctgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 15692  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  15691 agtttgaaccatcttcatagcc 15670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 197182 - 196961
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||| || |||| |||||||||||||||||| ||||||||||||    
T  197182 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaattcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 197083  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197082 tcattgctgaaaaagctctttcaacggatgctgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 196983  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  196982 agtttgaaccatcttcatagcc 196961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26540753 - 26540974
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||| || |||| |||||||||||||||||| ||||||||||||    
T  26540753 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 26540852  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26540853 tcattgctgaaaaagctctttcaacggatgctgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 26540952  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  26540953 agtttgaaccatcttcatagcc 26540974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 203927 - 203778
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |  ||||| ||||||||||||||| ||||||| |||||||||| |    
T  203927 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattttat-acacattgttgatcttgttgcacaatttagtcttgataattt 203829  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatca 151  Q
    ||||||||||||||| |||||||||||| |||||||| || ||||||||||    
T  203828 tcattgctgaaaaagctctttcaacggatgttgtcgataccggcaatatca 203778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1280455 - 1280335
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||  |||||||||||    
T  1280455 tcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaaatcattgaaccacacattgttgatcttattgcgcaatttagacttgataatct 1280356  T
Q  101 tcattgctgaaaaagatcttt 121  Q
    |||||| |||||||| |||||    
T  1280355 tcattgttgaaaaagctcttt 1280335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3055559 - 3055482
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||||||||  ||||||| |||||    
T  3055559 tcatcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttgatcatgttg 3055482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11852792 - 11852730
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacaca 63  Q
    ||||||||||| || ||||||||| | |||||||||||||||||||||||||| |||||||||    
T  11852792 tcatcaagtgagttaaatatctcccgttcggtgtaacatatcatcaagtcattgaaccacaca 11852730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22541963 - 22541905
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaacca 59  Q
    ||||| |||||||||||||||| | | ||| ||||||||||||||||||||||||||||    
T  22541963 tcatcgagtgacttgaatatcttccgttcgatgtaacatatcatcaagtcattcaacca 22541905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8785859 - 8785782
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||| ||| |||||||||||| ||| | ||||| |||| ||||||||||| |||||||||  |||||||||||||    
T  8785859 tcatcaactgaattgaatatctcccgcttgatgtaatatattatcaagtcattgaaccacacatcgttgatcttgttg 8785782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 27168903 - 27168941
Alignment:
Q  3 atcaagtgacttgaatatctcctgctcggtgtaacatat 41  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  27168903 atcaagtgacttgaatatctcccgctcggtgtaacatat 27168941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23244668 - 23244745
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||||||||| ||||| || | |||||   |||||||||||||||||||| ||| |||||  |||||||||||||    
T  23244668 tcatcaagtgactagaataacttccgctcgacataacatatcatcaagtcattgaacgacacatcgttgatcttgttg 23244745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Complemental strand, 14009513 - 14009483
Alignment:
Q  89 tcttgataatcttcattgctgaaaaagatct 119  Q
    |||||||||||||||||||||||||||||||    
T  14009513 tcttgataatcttcattgctgaaaaagatct 14009483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 38395282 - 38395316
Alignment:
Q  90 cttgataatcttcattgctgaaaaagatctttcaa 124  Q
    ||||||||| |||||||||||||||||||||||||    
T  38395282 cttgataattttcattgctgaaaaagatctttcaa 38395316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22483626 - 22483405
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||  || |||| |||||||||||||||||| ||||||||||||    
T  22483626 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccattcattgttaatcttgttgcgcaatttagtcttgataatct 22483527  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22483526 tcattgctgaaaaagctctttcaacggatgttgtcgacaccggcaatatcaaagccaactcaatgagtttgtagactaatggaaataccaaatgtttctc 22483427  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  22483426 agtttgaaccatcttcatagcc 22483405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34526429 - 34526208
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||| || |||| |||||||||||||||||| ||||||||||||    
T  34526429 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 34526330  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526329 tcattgctgaaaaagctctttcaacggatgctgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 34526230  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  34526229 agtttgaaccatcttcatagcc 34526208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 22464747 - 22464529
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||| || |||| |||||||||||||||||| ||||||||||||    
T  22464747 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatct 22464648  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22464647 tcattgctgaaaaagctctttcaacggatgctgtcgacaccggcaatatcaaagccaactcaatgagtttgcagaccaatggaaataccaaatgtttctc 22464548  T
Q  201 agattgaaccatcttcata 219  Q
    || ||||||||||||||||    
T  22464547 agtttgaaccatcttcata 22464529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35649758 - 35649977
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||  ||||||||| | ||  |||||| |||| |||||||    
T  35649758 tcatcaaatgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaacaacacatcgttgatcttctggc--aatttagtctttataatct 35649855  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| |||||||||||| | |||| |||| |  |||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||    
T  35649856 tcattgctgaaaaagctctttcaacggatgctgtcaacaccgaaaatatcaaagccaactcaataagtttctagaccaatgaaaacaccaaatgtttctc 35649955  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  35649956 agtttgaaccatcttcatagcc 35649977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 33453286 - 33453504
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaa-catatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatc 99  Q
    |||||||||||||| ||||||||| ||||||||||| ||||| || |||||||| | |||||||  ||||||||||||||||| ||||  ||||||||||    
T  33453286 tcatcaagtgacttaaatatctcccgctcggtgtaaacatatgatgaagtcattga-ccacacatcgttgatcttgttgcgcagtttagacttgataatc 33453384  T
Q  100 ttcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttct 199  Q
    ||||||| |||||||| ||||||| |||| | |||| |||| ||||||||||||||||||||||||||||||||||| |||  ||||| |||||||||||    
T  33453385 ttcattgttgaaaaagctctttcagcggatgatgtcaacaccggcaatatcaaagccaactcaatgagtttgtagacaaataaaaataacaaatgtttct 33453484  T
Q  200 cagattgaaccatcttcata 219  Q
    | | |||||| |||||||||    
T  33453485 cggtttgaacaatcttcata 33453504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 39368455 - 39368371
Alignment:
Q  116 atctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||| | | || |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39368455 atctttcaacggatgctctcaacaccgacaatatcaaagccaactcaatgagtttgtagaccaatgaaaataccaaatgtttctc 39368371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 12539650 - 12539574
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||||||||| |||||| || ||||||||||||||    
T  12539650 tcatcaagtgacttgaatatcttatgctcggt-taacatatcatcaagtcattgaaccacgcattgttgatcttgttg 12539574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 34317565 - 34317642
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||| |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||   ||||||||||||    
T  34317565 tcatgaagtgacttgaatatctcttactcggtgtaacatatcatcaagtcattgaaccacacatcattgatcttgttg 34317642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19951929 - 19952015
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaattta 87  Q
    |||||||||||||||||||||||  |||| |||| ||||||| |||||||||| ||||| |||  ||| ||||||||||||||||||    
T  19951929 tcatcaagtgacttgaatatctctcgctcagtgtgacatatcgtcaagtcattgaaccatacatcgttaatcttgttgcgcaattta 19952015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13308793 - 13308745
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagt 49  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  13308793 tcatcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagt 13308745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Original strand, 12055221 - 12055251
Alignment:
Q  89 tcttgataatcttcattgctgaaaaagatct 119  Q
    |||||||||||||||||||||||||||||||    
T  12055221 tcttgataatcttcattgctgaaaaagatct 12055251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Complemental strand, 43525269 - 43525239
Alignment:
Q  89 tcttgataatcttcattgctgaaaaagatct 119  Q
    |||||||||||||||||||||||||||||||    
T  43525269 tcttgataatcttcattgctgaaaaagatct 43525239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 5088627 - 5088594
Alignment:
Q  90 cttgataatcttcattgctgaaaaagatctttca 123  Q
    ||||||||| ||||||||||||||||||||||||    
T  5088627 cttgataattttcattgctgaaaaagatctttca 5088594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 9844966 - 9844999
Alignment:
Q  90 cttgataatcttcattgctgaaaaagatctttca 123  Q
    ||||||||| ||||||||||||||||||||||||    
T  9844966 cttgataattttcattgctgaaaaagatctttca 9844999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 24074489 - 24074270
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||| | |||||    
T  24074489 tcatcaagtaacttgaatatctccccctcggtgtaacatatcatcaagtcattttaccacacattgttgatcttgttgcgcaatttagtcttcacaatct 24074390  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24074389 tcattgctgaaaaagctctttaaacggatgttgtcgacaccggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 24074290  T
Q  201 agattgaaccatcttcatag 220  Q
    || ||||||||||| |||||    
T  24074289 agtttgaaccatctacatag 24074270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 12180624 - 12180700
Alignment:
Q  2 catcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  12180624 catcaagtgacttgaatttctcccactcggtgtaacatatcatcaagtcattgaaccacacaatgttgatcttgttg 12180700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11971037 - 11970964
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatctt 74  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||| |||||||||  |||||||||    
T  11971037 tcatcaagtgacttgaatatcttccgctcggtgtaacatatgatcaagtcattgaaccacacatcgttgatctt 11970964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3050940 - 3050902
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacat 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  3050940 tcatcaagtgacttgaatatctcccgctcggtgtaacat 3050902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25599229 - 25599172
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaacc 58  Q
    |||||||||||||||| |||||||  |||| ||||||||| |||||||||||| ||||    
T  25599229 tcatcaagtgacttgattatctcccactcgatgtaacataccatcaagtcattgaacc 25599172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25340522 - 25340445
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||||||| ||||||| |  || |||||||||||||||||| ||| | || ||||||   ||||||||||||    
T  25340522 tcatcaagtgacttaaatatcttccactgggtgtaacatatcatcaaatcacttaatcacacatcattgatcttgttg 25340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 10895207 - 10895239
Alignment:
Q  90 cttgataatcttcattgctgaaaaagatctttc 122  Q
    ||||||||| |||||||||||||||||||||||    
T  10895207 cttgataattttcattgctgaaaaagatctttc 10895239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 259995 - 259774
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttgcgcaatttactcttgataatct 100  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||||||    
T  259995 tcatcaagtgacttgaatatatcccgctcgatgtaacatatcatcaagtcattgaaccactcattgttgatcttgttgcgcaatttagtcttgataatct 259896  T
Q  101 tcattgctgaaaaagatctttcaacggaagttgtcgacactggcaatatcaaagccaactcaatgagtttgtagaccaatggaaataccaaatgtttctc 200  Q
    ||||||||||||||  |||||||||||| |  |||||||| ||||||||||||||||||||||| | |||||||||||||  |||| ||| |||||||||    
T  259895 tcattgctgaaaaaactctttcaacggatgcagtcgacaccggcaatatcaaagccaactcaattaatttgtagaccaataaaaatgccagatgtttctc 259796  T
Q  201 agattgaaccatcttcatagcc 222  Q
    || |||||||||||||||||||    
T  259795 agtttgaaccatcttcatagcc 259774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 17813 - 17740
Alignment:
Q  5 caagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||| ||||||||| ||||| |||||| ||||||||||||||| |||||||||  |||||||||||||    
T  17813 caagtgacttaaatatctcccgctcgatgtaacgtatcatcaagtcattgaaccacacatcgttgatcttgttg 17740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 435450 - 435530
Alignment:
Q  3 atcaagtgacttgaatatctcctgctcggtgtaa-----catatcatcaagtcattcaaccacacagtgttgatcttgttg 78  Q
    |||||||||||||||||||| | |||||||||||     ||||||||||||||||| | ||||||| | ||||||||||||    
T  435450 atcaagtgacttgaatatcttccgctcggtgtaacatatcatatcatcaagtcattgagccacacattattgatcttgttg 435530  T

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Target: scaffold0198 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1473 - 1430
Alignment:
Q  1 tcatcaagtgacttgaatatctcctgctcggtgtaacatatcat 44  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  1473 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcat 1430  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 12041 - 12075
Alignment:
Q  90 cttgataatcttcattgctgaaaaagatctttcaa 124  Q
    ||||||||| |||||||||||||||||||||||||    
T  12041 cttgataattttcattgctgaaaaagatctttcaa 12075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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