View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_low_4 (Length: 610)
Name: NF1726_low_4
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 45551879 - 45552459
Alignment:
| Q |
1 |
tatcatatataccttgttgtggttcaatgttctcctcttcaacatgactatgaacaactcttgaatccatgattgtaaattgtaattgcaattttgtagt |
100 |
Q |
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| T |
45551879 |
tatcatatataccttgttgtggttcaatgttctcctcttcaacatgactatgaacaactcttgaatccatgattgtaaattgtaattgcaattttgtagt |
45551978 |
T |
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| Q |
101 |
aaacagaagaaagaaactgctgtgatagagaagaacaagcttctgttatatataggaagaaaaaataagcatgaaactctatgtcaccattttgaattta |
200 |
Q |
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| T |
45551979 |
aaacagaagaaagaaactgctgtgatagagaagaacaagcttctgttatatataggaagaaaaaataagcatgaaactctatgtcaccattttgaattta |
45552078 |
T |
|
| Q |
201 |
aatatggagacacatgtcacataaccaacatgtaattaatatttgacacgtgttgagtatatttgtgtacgtggagtcctataattggtagtctttgtca |
300 |
Q |
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| T |
45552079 |
aatatggagacacatgtcacataaccaacatgtaattaatatttgacacgtgttgagtatatttgtgtacgtggagtcctataattggtagtctttgtca |
45552178 |
T |
|
| Q |
301 |
taagacaaaactgctcttgtacacgtgagtacgtatagatgaaactgcacaagtgtctatggctgtttggaaggagagaaaaacataacaatggtactct |
400 |
Q |
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| T |
45552179 |
taagacaaaactgctcttgtacacgtgagtacgtatagatgaaactgcacaagtgtctatggctgtttggaaggagagaaaaacataacaatggtgctct |
45552278 |
T |
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| Q |
401 |
tatcattttttaatggttactttaattatttgacagctaatgataatgatatacacaaataattttatgatattaatattctgtgac--tggattactat |
498 |
Q |
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| T |
45552279 |
tatcattttttaatggttactttaattatttgacagctaatgataatgatatacacaaataattttatgatattaatattctgtgactgtggattagtat |
45552378 |
T |
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| Q |
499 |
atggtaatacaagtgtctagtttggttctttttctgtagatgatcgaataattaagggtgtgagtcgacattagaacttgt |
579 |
Q |
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| T |
45552379 |
atggtaatacaagtgtctagtttggttctttttctgtagatgatcgaataattaagggtgtgagtcgacattagaacttgt |
45552459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 45546687 - 45546741
Alignment:
| Q |
29 |
gttctcctcttcaacatgactatgaacaactcttgaatccatgattgtaaattgt |
83 |
Q |
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| T |
45546687 |
gttctccccttccacatgactatgaacaactcttgaatccatgattataaattgt |
45546741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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