View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_low_5 (Length: 552)
Name: NF1726_low_5
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 266 - 537
Target Start/End: Original strand, 44298115 - 44298389
Alignment:
| Q |
266 |
gtaaactaatgagttaagcaagaaaaacaatgaatgaac----tattaacacggtaaacatatttcgtttcatcaaattatgcagtcacaaaagtgtgat |
361 |
Q |
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| T |
44298115 |
gtaaactaatgagttaagcaagaaaaacaatgaatgaacgaactattaacacggtaaacatatttcgtttcatcaaattatgaagtcacaaaagtgtgat |
44298214 |
T |
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| Q |
362 |
gccaatgctaaacgtagattaatacgttaaaaaatgaaatgacattaacattaattttacgcccaaagtgccattaccgacatgcctcctgcacctagca |
461 |
Q |
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| T |
44298215 |
gccaatgctaaac-tagattaatacgttaaaaaatgaaataacattaacattaattttacgcccaaagtgccattaccgacatgcctcctgcacctagca |
44298313 |
T |
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| Q |
462 |
aaacagcgacgtaagaccatatttgaagcttcattctactttgcaactttgcacccataaaatcattagccaataa |
537 |
Q |
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| T |
44298314 |
aaacagcgacgtaagaccatatttgaagcttcattctactttgcaactttgcacccataaaatcattagccaataa |
44298389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 44298000 - 44298114
Alignment:
| Q |
75 |
agaggttgtggcttttcttggtcttccttctaactcattcccgaagtatatagcgtcacttttttcatgaatgtcatatctggccatgtcgattttggta |
174 |
Q |
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| T |
44298000 |
agaggttgtggcttttcttggtcttccttctaactcattcccgaagtatatagcgtcacttttttcatgaatgtcatatctggccatgtcgattttggta |
44298099 |
T |
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| Q |
175 |
atgttttgtatttaa |
189 |
Q |
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| T |
44298100 |
atgttttgtatttaa |
44298114 |
T |
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