View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_low_8 (Length: 449)
Name: NF1726_low_8
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 66 - 434
Target Start/End: Original strand, 13871915 - 13872289
Alignment:
| Q |
66 |
gataattcttggtatatgcaaattgcagtgcctctagtgatggtcccatctgtgaatgtacctggtcaagtggtcttgcagaatcaccactctaaaccat |
165 |
Q |
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| T |
13871915 |
gataattcttggtatatgcaaattgcagtgcctctagtgatggtcccatctgtgaatgtacctggtcaagtggtcttgcagaatcaccactctaaaccat |
13872014 |
T |
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| Q |
166 |
gataaagaaacaaacattcagcagtacattactcgtaggaatgccggagaaagacaattacaaagaacttaacaagtgaggtgatcacttgatagttcca |
265 |
Q |
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| T |
13872015 |
gataaagaaacaaacattcagcagtacattactcgtaggaatgccggagaaagacaattacaaagaacttaacaagtgaggtgatcacttgatagttcca |
13872114 |
T |
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| Q |
266 |
taaaacagttaaaaatgaaattatgctatcaatactatgatttgacactccgaca----acag--aatgacagacaattaccaagaacttcaacaagtgt |
359 |
Q |
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| T |
13872115 |
taaaacagttaaaaatgaaattatgctatcaatactatgatttgacaatccgacaagttacggcaacagaatgacaattaccaagaacttcaacaagtgt |
13872214 |
T |
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| Q |
360 |
agtgatcacttcctataaacacaattaacaaggaaatgaggccattgattatttgtagcgatgcctggtataaac |
434 |
Q |
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| T |
13872215 |
agtgatcacttcctataaacacaattaacaaggaaatggggccattgattatttgtagcgatgcctggtataaac |
13872289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 139 - 410
Target Start/End: Original strand, 13884268 - 13884557
Alignment:
| Q |
139 |
tcttgcagaatcaccactctaaaccatgataaagaaacaaacattcagcagtacattactcgtaggaatgccggagaaagacaattacaaagaacttaac |
238 |
Q |
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| T |
13884268 |
tcttgcaaaatcatcaacctaaaccatgataaagaaagaagcattcagcaggacattactcgttgggatgccggagaaagacaattacaaagaacttcac |
13884367 |
T |
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| Q |
239 |
aagtgaggtgatcacttga--------------tagttccataaaacagttaaaaatgaaattatgctatcaatactatgatttgacactccgacaacag |
324 |
Q |
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| T |
13884368 |
aagtgaggtgatcacttgatagttctcacttgttagttccataaaacagtt--aaaggaaattatgctatcaaaactaagatttgacaaactaacaactt |
13884465 |
T |
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| Q |
325 |
a------atgacagacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccattgatta |
410 |
Q |
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| T |
13884466 |
acggcaccagaatgacaattaccaagaacttcaacaagtgtagtgatcacttcccataaacacaattaacaaggaaatgaagccattaatta |
13884557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 136 - 286
Target Start/End: Original strand, 13882457 - 13882607
Alignment:
| Q |
136 |
tggtcttgcagaatcaccactctaaaccatgataaagaaacaaacattcagcagtacattactcgtaggaatgccggagaaagacaattacaaagaactt |
235 |
Q |
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| T |
13882457 |
tggtcttgcaaaatcaccactctaaaccatgataaagaaacaaacattcagcagtacattgcatgtaatgacgctggagaaagacaattacaaagaactt |
13882556 |
T |
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| Q |
236 |
aacaagtgaggtgatcacttgatagttccataaaacagttaaaaatgaaat |
286 |
Q |
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| T |
13882557 |
aacaagtgagaggatcacagtatagtcccataaaacagttaaaaatgaaat |
13882607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 332 - 405
Target Start/End: Complemental strand, 12957719 - 12957646
Alignment:
| Q |
332 |
gacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccatt |
405 |
Q |
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| T |
12957719 |
gacaattaccaagaacttcaaaaagtgtagtaatcacttcccataaacacaattaacaaggaaatgaggccatt |
12957646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 16025043 - 16025153
Alignment:
| Q |
187 |
cagtacattactcgtaggaatgccggagaaagacaattacaaagaacttaacaagtgaggtgatcacttgatagttccataaaacagttaaaaatgaaat |
286 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||| ||||||||| |||||| | ||||| |||||||| |||||||||||||||||||||||| |
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| T |
16025043 |
cagtacatcactcgtagtgatgccggagaaagacaattataaagaacttcacaagtaaatcgatcatttgatagtcccataaaacagttaaaaatgaaat |
16025142 |
T |
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| Q |
287 |
tatgctatcaa |
297 |
Q |
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||||||||| |
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| T |
16025143 |
ggtgctatcaa |
16025153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 13874401 - 13874491
Alignment:
| Q |
222 |
attacaaagaacttaacaagtgaggtgatcacttgatagttccataaaacagttaaaaatgaaattatgctatcaatactatgatttgaca |
312 |
Q |
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||||||||||||||||||||||||| |||||||||||||| || |||||| || ||||| |||| ||| ||||||| ||||||||||||| |
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| T |
13874401 |
attacaaagaacttaacaagtgaggggatcacttgatagtcccgtaaaaccattgaaaattaaatgatgttatcaatgctatgatttgaca |
13874491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 14397237 - 14397150
Alignment:
| Q |
188 |
agtacattactcgtaggaatgccggagaaagacaattacaaagaacttaacaagtgaggtgatcacttgatagttccataaaacagtt |
275 |
Q |
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| T |
14397237 |
agtacattactcattgtgatgccggtgaaacacgattacaaagaactttaaaagtgaggggaacacttgatagtcccataaaacagtt |
14397150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 16024957 - 16025007
Alignment:
| Q |
138 |
gtcttgcagaatcaccactctaaaccatgataaagaaacaaacattcagca |
188 |
Q |
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|||| ||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
16024957 |
gtctagcagaatcaccaccctaaaccatgataaagaaaaaaacattcagca |
16025007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 40165794 - 40165746
Alignment:
| Q |
138 |
gtcttgcagaatcaccactctaaaccatgataaagaaacaaacattcag |
186 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40165794 |
gtctagcagaatcaccagcctaaaccatgataaagaaacaaacattcag |
40165746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 14392781 - 14392729
Alignment:
| Q |
139 |
tcttgcagaatcaccactctaaaccatgataaagaaacaaacattcagcagta |
191 |
Q |
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||||||||||||| |||| ||||||||||||| || ||||||||| ||||||| |
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| T |
14392781 |
tcttgcagaatcaacactttaaaccatgataatgacacaaacatttagcagta |
14392729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 13874513 - 13874605
Alignment:
| Q |
319 |
caacagaatgacagacaattaccaagaacttcaacaagtgtagtgatcactt---cctataaacacaattaacaa-ggaaatgaggccattgat |
408 |
Q |
| |
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||| ||||||| || ||||||||||||||||| ||||||| | |||||||| || ||||||||||||||||| | |||||||||||||||| |
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| T |
13874513 |
caatagaatgaatgagaattaccaagaacttca-caagtgtggcgatcacttagtcccataaacacaattaacaacgaaaatgaggccattgat |
13874605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 14392653 - 14392607
Alignment:
| Q |
225 |
acaaagaacttaacaagtgaggtgatcacttgatagttccataaaac |
271 |
Q |
| |
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|||| |||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
14392653 |
acaatgaactttacaagtgaggggatcacttgatagtcccataaaac |
14392607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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