View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_low_9 (Length: 415)
Name: NF1726_low_9
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 5465499 - 5465115
Alignment:
| Q |
18 |
gaatgaagttaacagttgaccacgaatattatgtccacgtgatcacgcattcggaacatcgatgacttgatgaacaacaacaatgtcatcaatgagttgt |
117 |
Q |
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| T |
5465499 |
gaatgaagttaacagttgaccacgaatattatgtccacgtgatcacgcattcggaacatcgatgacttgatgaacaacagcaaagtcaacaatgagttgt |
5465400 |
T |
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| Q |
118 |
cgcaaatgttcagaacgcgtgaatgtgaactatttgattgaacaaccgcaatgtcatgcatcaccaccaccaatgatctgaatgtatgaaagtgtggatt |
217 |
Q |
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| T |
5465399 |
cggaaatgttcagaacgcgtgaatgtgaactatttgattgaacaaccgcaatgtcatgcatcaccacca---atgatctgaatgtatgaaagtgtggatt |
5465303 |
T |
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| Q |
218 |
gaaaataacaacataagtttcttttggtttttggattgaaaaataacaacaataagccttgttacaacattttaagtcagtacttggagtcttcaatttt |
317 |
Q |
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| T |
5465302 |
gaaaataacaacataagtttcttttggtttttggattgaaaaataacaacaataagccttgttacaacattttaagtcagtactttgagtcttcaatttt |
5465203 |
T |
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| Q |
318 |
actttgtgttgggtttacctaatagctaatttcaagaagcattgtgtgtcatcattttacactttaagtttgttagaagttttgatga |
405 |
Q |
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| T |
5465202 |
actttgttttgggtttacctaatagctaatttcaagaagcattgtgtgtcatcattttacactttaagtttgttagaagttttgatga |
5465115 |
T |
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