View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1727-Insertion-1 (Length: 909)
Name: NF1727-Insertion-1
Description: NF1727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1727-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Complemental strand, 50408152 - 50407631
Alignment:
| Q |
8 |
gaattttccacttttccttttccttttagtgaagaagaagaattttgagttaaaaccgataacaggttttcctcttatctcaagataagaattatccaag |
107 |
Q |
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| T |
50408152 |
gaattttccacttttccttttccttttagtgaagaagaagaattttgagttaaaaccgataacaggttttcctcttatctgaagataagaattatccaag |
50408053 |
T |
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| Q |
108 |
tcatacccatttacttgtgtaggggaaaagtatttcgtcactgttccttactctttaagatgaacctgtgtttcaccttgtattatgattgaaaaataat |
207 |
Q |
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| T |
50408052 |
tcatacccatttacttgtgtaggggaaaagtatttcgtcactgttccttactctttaagatgaacctgtgtttcaccttgtattatgattgaaaaataat |
50407953 |
T |
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| Q |
208 |
tgttattatataccgtaagaaacaaaagttgagtttcatgnnnnnnngtgatgactaaaacaaaacttgcatgaaacaatacgcacgcttgccctcgttt |
307 |
Q |
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| T |
50407952 |
tgttattatataccgtaagaaacaaaagttgagtttcatgtttttttgtgatgactaaaacaaaacttgcatgaaacaatatacacgcttgccctcgttt |
50407853 |
T |
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| Q |
308 |
gaaatccagctataatatt---gtctgtcaagattttatgttgtcggaggaaatctaatctaagtggtcacatgcatgcatgcacagcacgaagagagat |
404 |
Q |
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| T |
50407852 |
gaaatccagctataatattgtcgtctgtcaagattttatgttgtcggaggaaatctaatctaagtggtcacatgcatgcatgcacagcacgaagagagat |
50407753 |
T |
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| Q |
405 |
cagttcaatctctaaaattattgactctacttaataattagagttggattggaaatacgtcaattttacttggaaactccatgtcttctcttgtccaccc |
504 |
Q |
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| T |
50407752 |
cagttcaatctctaagattattgactctacttaataattagagttgtattgaaaatacgtcaattctacttggaaactccatgtcttctcttgtccaccc |
50407653 |
T |
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| Q |
505 |
gcttgctattaacgttatctct |
526 |
Q |
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| T |
50407652 |
gcttgctattaacgttatctct |
50407631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 561 - 909
Target Start/End: Complemental strand, 50407559 - 50407223
Alignment:
| Q |
561 |
tatctcatgtcaataaaggttggttcaattgcgtaagtactcaattgattannnnnnnnnnnagatactctacaattgcacaagttatccatataaagtt |
660 |
Q |
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| T |
50407559 |
tatctcatgtcaataaaggttggttcaattgcgtaagtactcaattgatt---------tatagatactctacaattgcactagttatcgatataaagtt |
50407469 |
T |
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| Q |
661 |
ctcgtaattttattttttgagaatacttttaaatatatctataataagtgtttctctaaaccttagcacnnnnnnnnnnnnnagaaataaacctttactt |
760 |
Q |
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| T |
50407468 |
ctcgtaattttattttttgagaatacttttaaatatatctataataagtgtttctctaaaccttagcacttttttttttt---gaaataaacctttactt |
50407372 |
T |
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| Q |
761 |
aattagttaatttgaaatccttaaataatgccacacgaaactcgttaacaaaatccatcttttatgagcctaattatgatgaaaaagctaagcaagtgta |
860 |
Q |
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| T |
50407371 |
agttagttaatttgaaatccttaaataatgccacacgaaactcgttaacaaaatccatcttttatgaacctaattatgatgaaaaagctaagcaagtgta |
50407272 |
T |
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| Q |
861 |
atacttagttggttatttgcttaacataaaatggtgatgtggcacttta |
909 |
Q |
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| T |
50407271 |
atacttagttggttatttgcttaacataaaatggtggtgtggcacttta |
50407223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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