View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17270_low_1 (Length: 443)
Name: NF17270_low_1
Description: NF17270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17270_low_1 |
 | |
|
| [»] scaffold0759 (1 HSPs) |
| | |
|
| [»] scaffold0056 (2 HSPs) |
| | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 39954336 - 39954723
Alignment:
| Q |
19 |
gtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgcggtgtagtaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39954336 |
gtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagttagtgaaatacttctctgcaatcgcggtgtagtaga |
39954435 |
T |
|
| Q |
115 |
atctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagctg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39954436 |
atctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagttg |
39954535 |
T |
|
| Q |
215 |
ttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttca |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
39954536 |
ttgttgaatttatagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttagattttatattggtaaattggtttca |
39954635 |
T |
|
| Q |
315 |
tttgtcttattcaaacatgtattaatgattttcnnnnnnnctgtattcaacccgtgcttcgcacgggtttataactagtttgtgaaaa |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39954636 |
tttgtcttattcaaacatgtattaatgattttcaaaaaaaatgtattcaacccgtgcttcgcacgggtttataactagtttgtgaaaa |
39954723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 1685541 - 1685210
Alignment:
| Q |
19 |
gtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgcggtgtagtaga |
114 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1685541 |
gtttatgtgtctcggaagttggaattggatcaagctgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggtgtagtaga |
1685442 |
T |
|
| Q |
115 |
atctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagctg |
214 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
1685441 |
atctacatatattaggacttttgttggtatcttgagatgtttaggatctaattattcaagtatatggtgtgatgttaattggcttgaataattctagcta |
1685342 |
T |
|
| Q |
215 |
ttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttca |
314 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| || |||| |||||| |
|
|
| T |
1685341 |
ttgttgaatttaaataattaagtgatggtccttatttagtgccgtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttca |
1685242 |
T |
|
| Q |
315 |
tttgtcttattcaaacatgtattaatgatttt |
346 |
Q |
| |
|
|||| ||||||||||||| || ||| |||||| |
|
|
| T |
1685241 |
tttgacttattcaaacatatagtaaggatttt |
1685210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 35539245 - 35539209
Alignment:
| Q |
358 |
tattcaacccgtgcttcgcacgggtttataactagtt |
394 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
35539245 |
tattgaacccgtgcttcgcacgggtttgtaactagtt |
35539209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 52037882 - 52037551
Alignment:
| Q |
19 |
gtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgcggtgtagtaga |
114 |
Q |
| |
|
||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52037882 |
gtttatgtgtctaggaagttggaattggatcaagctgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggtgtagtaga |
52037783 |
T |
|
| Q |
115 |
atctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagctg |
214 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
52037782 |
atctacatatattaggacttttgttggtatcttgagatgtttaggatctaattattcaagtatatggtgtgatgttaattggcttgaataattctagcta |
52037683 |
T |
|
| Q |
215 |
ttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttca |
314 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| || |||| |||||| |
|
|
| T |
52037682 |
ttgttgaatttaaataattaagtgatggtccttatttagtgccgtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttca |
52037583 |
T |
|
| Q |
315 |
tttgtcttattcaaacatgtattaatgatttt |
346 |
Q |
| |
|
|||| ||||||||||||| || ||| |||||| |
|
|
| T |
52037582 |
tttgacttattcaaacatatagtaaggatttt |
52037551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 13624095 - 13624197
Alignment:
| Q |
243 |
tccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatga |
342 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| ||||||||||||||||||||| || |||| |||||||||| ||||||||||||| || ||| || |
|
|
| T |
13624095 |
tccttatttagtgcggtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaagga |
13624194 |
T |
|
| Q |
343 |
ttt |
345 |
Q |
| |
|
||| |
|
|
| T |
13624195 |
ttt |
13624197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 17672393 - 17672429
Alignment:
| Q |
358 |
tattcaacccgtgcttcgcacgggtttataactagtt |
394 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
17672393 |
tattgaacccgtgcttcgcacgggtttgtaactagtt |
17672429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 18815133 - 18815169
Alignment:
| Q |
358 |
tattcaacccgtgcttcgcacgggtttataactagtt |
394 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
18815133 |
tattaaacccgtgcttcgcacgggtttgtaactagtt |
18815169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 37478290 - 37477958
Alignment:
| Q |
19 |
gtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgcggtgtagtaga |
114 |
Q |
| |
|
||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37478290 |
gtttatgtgtcttggaagttggaattggatcaagctgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggtgtagtaga |
37478191 |
T |
|
| Q |
115 |
atctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagctg |
214 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
37478190 |
atctacatatattaggacttttgttggtatcttgagatgtttaggatctaattattcaagtatatggtgtgatgttaattggcttgaataattctagcta |
37478091 |
T |
|
| Q |
215 |
ttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttca |
314 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||| || |||| |||||| |
|
|
| T |
37478090 |
ttgttgaatttaaataattaagtgatggtccttatttactgcagtaacattttgggattgacttagtacatttggattttatcttaggaaatcagtttca |
37477991 |
T |
|
| Q |
315 |
tttgtcttattcaaacatgtattaatgattttc |
347 |
Q |
| |
|
|||| ||||||||||||| || ||| ||||||| |
|
|
| T |
37477990 |
tttgacttattcaaacatatagtaaggattttc |
37477958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 21886960 - 21886748
Alignment:
| Q |
20 |
tttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgcggtgtagtagaa |
115 |
Q |
| |
|
|||||| |||||| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21886960 |
tttatgtgtctcgtaagttggaattggatcaagttgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggtgtagtagaa |
21886861 |
T |
|
| Q |
116 |
tctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagctgt |
215 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| | |
|
|
| T |
21886860 |
tctacatatattaggacttttgttggtatcttgagatgtttagggtctaattattcaagtatatggtgtgatgttaattggcttgaataattctagctat |
21886761 |
T |
|
| Q |
216 |
tgttgaatttaaa |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21886760 |
tgttgaatttaaa |
21886748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 393
Target Start/End: Original strand, 3795718 - 3795753
Alignment:
| Q |
358 |
tattcaacccgtgcttcgcacgggtttataactagt |
393 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3795718 |
tattcaacccgtgcttcgcacgggtttgtaactagt |
3795753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 41053358 - 41053688
Alignment:
| Q |
19 |
gtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgcggtgtagtaga |
114 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| | |
|
|
| T |
41053358 |
gtttatgtgtctcggaagttggaattggatcaagttgcttgagtgttgtccgatacacaacagttggtgaaatacttatctgtaatcgcggtgtagtata |
41053457 |
T |
|
| Q |
115 |
atctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagctg |
214 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
41053458 |
atctacatatattaggacttttgttggtatcttgagatgtttagggtctaattattcaagtatatggtgtgatgttaattggcttgaataattctagcta |
41053557 |
T |
|
| Q |
215 |
ttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttca |
314 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
41053558 |
ttgttgaatttaaataattaagtgatggtccttatttagtgcggtaacattttgggattggcttagtacacttggattttatcttaggaaatcggtttca |
41053657 |
T |
|
| Q |
315 |
tttgtcttattcaaacatgtattaatgattt |
345 |
Q |
| |
|
||||||||||||| |||| || ||| ||||| |
|
|
| T |
41053658 |
tttgtcttattcagacatatagtaaggattt |
41053688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 48519691 - 48519654
Alignment:
| Q |
358 |
tattcaacccgtgcttcgcacgggtttataactagttt |
395 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48519691 |
tattcaacccgtgcttcgcacgggtttgtaactagttt |
48519654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 44800211 - 44800527
Alignment:
| Q |
19 |
gtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaaca----gtgaaatacttctctgcaatcgcggtgtagtaga |
114 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
44800211 |
gtttatgtgtctcagaagttggaattggatcaagctgcttgagcgttgttcgatacacaacaattggtgaaatacttctctgcaatcgcggtatagtaga |
44800310 |
T |
|
| Q |
115 |
atctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagctg |
214 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||| || |
|
|
| T |
44800311 |
atctacatatattaggacttttgttggtatcttgagatgtttagggtctaatcgttcaagtatatggtgtgatgttaattggcttgaataattctagttg |
44800410 |
T |
|
| Q |
215 |
ttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttca |
314 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
44800411 |
ttgttgaatttaaataattaagtgatggtccttatttagtgcggtaacattttggaattgacttagtacacttggattttatcttagtaaatcggtttca |
44800510 |
T |
|
| Q |
315 |
tttgtcttattcaaaca |
331 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
44800511 |
tttgtcttattcaaaca |
44800527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 255
Target Start/End: Original strand, 26456701 - 26456918
Alignment:
| Q |
38 |
tggaattggatcaaactgcttgagtgttgtccgatacacaacagtgaaatacttctctgcaatcgcggtgtagtagaatctacatatattaagacttttg |
137 |
Q |
| |
|
|||||||||||||| |||||| |||||||| | |||| | |||||||| ||||||||||||| |||||||||||||| |||| |||| |||||||| |
|
|
| T |
26456701 |
tggaattggatcaagctgcttaagtgttgtgtggtacaatag-gtgaaatatttctctgcaatcgtggtgtagtagaatcagcatacattaggacttttg |
26456799 |
T |
|
| Q |
138 |
ctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataatt-ttagctgttgttgaatttaaagaattaaa |
236 |
Q |
| |
|
||||||||||||||| |||||||||| | | || ||||||||| | | |||||||||| |||||| |||| || || |||| ||||| |||| || || |
|
|
| T |
26456800 |
ctggtatcttgagatttttagggtctgactgttgaagtatatggtctcatgttaattgccttgaagaattcctaactattgtggaattgaaagcataaag |
26456899 |
T |
|
| Q |
237 |
tgatggtccttatttagtg |
255 |
Q |
| |
|
|| ||||||||||| |||| |
|
|
| T |
26456900 |
tggtggtccttattaagtg |
26456918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 37 - 255
Target Start/End: Original strand, 43382108 - 43382326
Alignment:
| Q |
37 |
ttggaattggatcaaactgcttgagtgttgtccgatacacaacagtgaaatacttctctgcaatcgcggtgtagtagaatctacatatattaagactttt |
136 |
Q |
| |
|
||||||||||||||| |||||| |||||| | |||||| | |||||||| || |||||||||| |||||||||||||| |||| |||| |||||| |
|
|
| T |
43382108 |
ttggaattggatcaagctgcttaagtgttatgcgatacgatag-gtgaaatatttatctgcaatcgtggtgtagtagaatcagcatacattaggacttta |
43382206 |
T |
|
| Q |
137 |
gctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataatt-ttagctgttgttgaatttaaagaattaa |
235 |
Q |
| |
|
|||||||||||||||| |||| ||| | |||||| ||||||| | | | |||||||||| |||||| |||| ||||| |||| ||||| |||| || || |
|
|
| T |
43382207 |
gctggtatcttgagatttttatggtttgattattgaagtatacggtctgatgttaattgccttgaagaattcctagctattgtggaattgaaagcataaa |
43382306 |
T |
|
| Q |
236 |
atgatggtccttatttagtg |
255 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
43382307 |
gtgatggtccttattaagtg |
43382326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 32847203 - 32847240
Alignment:
| Q |
358 |
tattcaacccgtgcttcgcacgggtttataactagttt |
395 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
32847203 |
tattcaacccgtgctttgcacgggtttgtaactagttt |
32847240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 41531805 - 41531768
Alignment:
| Q |
358 |
tattcaacccgtgcttcgcacgggtttataactagttt |
395 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
41531805 |
tattcaacccgtgtttcgcacgggtttgtaactagttt |
41531768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 344
Target Start/End: Original strand, 11168694 - 11168793
Alignment:
| Q |
245 |
cttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatgatt |
344 |
Q |
| |
|
||||| |||||| |||||||||| |||||| ||||| ||||||||||||||| || | |||| |||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
11168694 |
cttatctagtgcggtaacattttgggattggcttaggacacttggattttatcttaagaaatcagtttcatttgacttattcaaacatgtagtaaggatt |
11168793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 11207439 - 11207525
Alignment:
| Q |
246 |
ttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacat |
332 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||||||||||| ||||| || | |||| ||||||||| ||||||||||||| |
|
|
| T |
11207439 |
ttatttagtgcggtaacattttgggattggcttagtacacttggagtttatcttaagaaatcagtttcatttaacttattcaaacat |
11207525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 4158356 - 4158286
Alignment:
| Q |
137 |
gctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataatt |
207 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||| ||||||||| | | |||||||||| |||||| |||| |
|
|
| T |
4158356 |
gctggtatcttgagatttttaggatctgattattgaagtatatggtctgatgttaattgacttgaagaatt |
4158286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 395
Target Start/End: Original strand, 11207668 - 11207700
Alignment:
| Q |
363 |
aacccgtgcttcgcacgggtttataactagttt |
395 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
11207668 |
aacccgtgcttcgcacgggtttgtaactagttt |
11207700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 3459 - 3423
Alignment:
| Q |
358 |
tattcaacccgtgcttcgcacgggtttataactagtt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3459 |
tattcaacccgtgcttcgcacgggtttataactagtt |
3423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 52710 - 52793
Alignment:
| Q |
97 |
caatcgcggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatg |
180 |
Q |
| |
|
|||||||||||| |||| || |||| ||||||||||||| | ||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
52710 |
caatcgcggtgtggtagtattagcatacattaagacttttgtcgatatcttgagatttttagggtctgattattgaagtatatg |
52793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 57823 - 57906
Alignment:
| Q |
97 |
caatcgcggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatg |
180 |
Q |
| |
|
|||||||||||| |||| || |||| ||||||||||||| | ||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
57823 |
caatcgcggtgtggtagtattagcatacattaagacttttgtcgatatcttgagatttttagggtctgattattgaagtatatg |
57906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 10819 - 10783
Alignment:
| Q |
358 |
tattcaacccgtgcttcgcacgggtttataactagtt |
394 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10819 |
tattcaacccgtgcttcgcacgggtttgtaactagtt |
10783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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