View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17270_low_2 (Length: 261)
Name: NF17270_low_2
Description: NF17270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17270_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 33345586 - 33345816
Alignment:
| Q |
18 |
ggttcaataccaaaagaaatcacgaactataaatatttctacgaacttgacctcagtaacaacaaacttgtgggagaatttccacaagaagttcttgatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
33345586 |
ggttcaataccaaaagaaatcacgaactataaatatttctacgaacttgacctcagtaacaacaaacttgtaggagaatttccaaaagaagttcttgatt |
33345685 |
T |
|
| Q |
118 |
ctaaacaactagtttttctagacctcaggtttaatcaactcaccggttcagttccatcgcagttatttaaaaaagatcttgacgtaattttcataaacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33345686 |
ctaaacaactagtttttctagacctcaggtttaatcaactcaccggttcagttccatcgcagttatttaaaaaagatcttgacgtaattttcataaacaa |
33345785 |
T |
|
| Q |
218 |
caacaagttcagtcaatgtttacctgagaat |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33345786 |
caacaagttcagtcaatgtttacctgagaat |
33345816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University