View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17271_high_5 (Length: 297)
Name: NF17271_high_5
Description: NF17271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17271_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 37651966 - 37652245
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37651966 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37652065 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37652066 |
acttgaaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37652165 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggt |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
37652166 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacgacattgttgttgctagtgctgttgatttcaggt |
37652245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 37634939 - 37635218
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37634939 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37635038 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
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| T |
37635039 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37635138 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
37635139 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggt |
37635218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 37637853 - 37638132
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37637853 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37637952 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37637953 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37638052 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
37638053 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggt |
37638132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 37640767 - 37641046
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37640767 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37640866 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37640867 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccaggggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37640966 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
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| T |
37640967 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattagcaacaacattgttattgctagtgctgttgatttcaggt |
37641046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 37646141 - 37646420
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37646141 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37646240 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37646241 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37646340 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
37646341 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggt |
37646420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 37649054 - 37649333
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
37649054 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37649153 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37649154 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37649253 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
37649254 |
atgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggt |
37649333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 280
Target Start/End: Original strand, 32388331 - 32388555
Alignment:
| Q |
56 |
agaccggtggtagggtagtaaaagtaacttccaatctgatccttcacttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaa |
155 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||| || |||||| ||||| || || |
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|
| T |
32388331 |
agaccggtagtagggtagtaaaagtaactaccaatttgatccttaacctggaatttgtaggtgtagttggttcccggggcaataggacattggactcccg |
32388430 |
T |
|
| Q |
156 |
gggtaccatcttgccatgaattcttcctctgttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgtt |
255 |
Q |
| |
|
|| ||||| ||| || || ||||| ||||||| |||| |||||||||||| | ||| ||||||||||||||||| || ||||| |||| ||||| |
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|
| T |
32388431 |
atgttccatcggcccacgagtttttcctttgttgaataccgctccatgtgaaaaggagtggctcatcaaggttgttgaaaacgttaactacaatgttgtt |
32388530 |
T |
|
| Q |
256 |
gttgctggtgctgttgatttcaggt |
280 |
Q |
| |
|
||||||||| | ||| ||||||||| |
|
|
| T |
32388531 |
gttgctggtaccgttaatttcaggt |
32388555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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