View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17271_low_12 (Length: 250)
Name: NF17271_low_12
Description: NF17271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17271_low_12 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 4802116 - 4802346
Alignment:
| Q |
10 |
attatactccatctctcaatccaaaaccattaaaatgttttatggtaagaatgtgagaaattgtgactatatgctatcaaaatccaacgtttattagaga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4802116 |
attatactccatctctcaatccaaaaccattaaaatgtttgatggtaagaatgcgagaaattgtgactatatgctatcaaaatccaacgtttattagaga |
4802215 |
T |
|
| Q |
110 |
aactaaacaacttgagatttattaaaccactaatcacacaagatccaataaatttcaaaaggctttataacagaacacccaacaaaaagaactaactaca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4802216 |
aactaaacaacttgagatttattaaaccacta----------atccaataaatttcaaaaggctttataacagaacacccaacaaaaagaactaactaca |
4802305 |
T |
|
| Q |
210 |
cccaacaaatagacgattgagcaaataggcgaggaagtccc |
250 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4802306 |
ctcagcaaatagacgattgagcaaataggcgaggaagtccc |
4802346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 4832558 - 4832634
Alignment:
| Q |
114 |
aaacaacttgagatttattaaaccactaatcacacaagatccaataaatttcaaaaggctttataacagaacaccca |
190 |
Q |
| |
|
||||||||||||||||||| | ||| | ||||||||||||||||| ||||||||| ||||| | ||||||||||||| |
|
|
| T |
4832558 |
aaacaacttgagatttattcagccattgatcacacaagatccaatcaatttcaaagggcttcaaaacagaacaccca |
4832634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 4830698 - 4830753
Alignment:
| Q |
104 |
tagagaaactaaacaacttgagatttattaaaccactaatcacacaagatccaata |
159 |
Q |
| |
|
||||||| | |||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4830698 |
tagagaatcaaaacaactgaagatttattaaaccactaatcacacaaaatccaata |
4830753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 4831159 - 4831236
Alignment:
| Q |
118 |
aacttgagatttattaaacc-actaatcacacaagatccaataaatttcaaaaggctttataacagaacacccaacaa |
194 |
Q |
| |
|
||||||||||||||| | || | | ||||||||||||||||| ||||||||| ||||| | || |||||||||||||| |
|
|
| T |
4831159 |
aacttgagatttattcagcccattgatcacacaagatccaatcaatttcaaagggcttcaaaagagaacacccaacaa |
4831236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University