View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17271_low_13 (Length: 239)
Name: NF17271_low_13
Description: NF17271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17271_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4802394 - 4802614
Alignment:
| Q |
1 |
ttgattctttctcaagaccaataactcgaaccatgtgttgtttctcaataaatcatgatcctgaaatagcagatcttattaaggacctcaagactatgtc |
100 |
Q |
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| T |
4802394 |
ttgattctttctcaagaccaataactcgaatcatgtgttgtttctcaataaatcatcatcctgaaatagtagatcttagtaaggacctcaagactatgtc |
4802493 |
T |
|
| Q |
101 |
attttagagttggtttttgttttgtcctaaagttcttaggcaatcacgtcatagtttactcttatgtggtcattataaattcaatgttcacttctataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4802494 |
attttagagttggtttttgttttgtcctaaagttcttaggcaatcacgtcatag-ttactcttatgtggtcattataaattcaatgttcacttctataat |
4802592 |
T |
|
| Q |
201 |
gaaagaatttgtgtactcttat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
4802593 |
gaaagaatttgtgtactcttat |
4802614 |
T |
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