View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17271_low_3 (Length: 493)

Name: NF17271_low_3
Description: NF17271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17271_low_3
NF17271_low_3
[»] chr8 (15 HSPs)
chr8 (4-269)||(5958820-5959085)
chr8 (285-480)||(5958638-5958833)
chr8 (4-269)||(5947752-5948002)
chr8 (150-269)||(5983362-5983481)
chr8 (4-250)||(5920176-5920416)
chr8 (290-415)||(5983248-5983370)
chr8 (285-412)||(5947641-5947765)
chr8 (411-480)||(5983156-5983225)
chr8 (411-475)||(5947548-5947615)
chr8 (4-81)||(5983526-5983603)
chr8 (306-365)||(5886324-5886386)
chr8 (206-236)||(5886436-5886466)
chr8 (306-371)||(5841579-5841644)
chr8 (306-371)||(5847733-5847798)
chr8 (306-371)||(5848289-5848354)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 4 - 269
Target Start/End: Complemental strand, 5959085 - 5958820
Alignment:
Q  4 tcaattaccatcataatgcaaatttccttcacattcaaaatccgatgccacataatattgtacaaccaatatctaatctttctacttatgaagatacatg 103  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5959085 tcaatgaccattataatgccaatttccttcacattcaaaatccgatggcacaaaatattgtacaaccaatatctaatctttctacttatgaagatacatg 5958986  T
Q  104 gtcaatagacagtgtagctcttcatcttaacccagtaaatcaagaaaatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaatt 203  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5958985 gtcaatagacagtgtagctcttcatcttaacccactaaatcaagaaaatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaatt 5958886  T
Q  204 gaattaatgcaacaatatgatcaatatcatgatttggttgaacttgatgaaactgtacctgaatta 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5958885 gaattaatgcaacaatatgatcaatatcatgatttggttgaacttgatgaaactgtgcctgaatta 5958820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 285 - 480
Target Start/End: Complemental strand, 5958833 - 5958638
Alignment:
Q  285 ctgtacctgaattattaaatcatcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctcctgcgaaaattca 384  Q
    |||| |||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5958833 ctgtgcctgaattagaaaatcatcaaagccttgaggattatgcttgtagcatcctagattcatctaattcccaagaacatgaagctcctgcgaaaattca 5958734  T
Q  385 gtgctacagtacgtctggtattattcatccattggattacaatattgatgctttcatgtgtatgtcatcattgccatcatcaatcagccaaatagt 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5958733 gtgctacagtacgtctggtattattcatccattggattacaatattgatgctttcatgtgtatgtcatcattgccatcatcaatcagccaaatagt 5958638  T

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Target: chr8; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 4 - 269
Target Start/End: Complemental strand, 5948002 - 5947752
Alignment:
Q  4 tcaattaccatcataatgcaaatttccttcacattcaaaatccgatgccacataatattgtacaaccaatatctaatctttctacttatgaagatacatg 103  Q
    ||||| ||||| ||||||| ||||||| || |||||||||||| || ||||| ||||| ||||||||||||||| ||| || | | |||||             
T  5948002 tcaatgaccattataatgccaatttccctctcattcaaaatccaataccacaaaatatagtacaaccaatatctgatccttttccatatga--------- 5947912  T
Q  104 gtcaatagacagtgtagctcttcatcttaacccagtaaatcaagaaaatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaatt 203  Q
          |||| ||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  5947911 ------agacggtgtagcccttcatctcaacccagttaatcaagaaaatcaatttttaaaaagtgatacgaccccacttaacaaattaatgaacccaatt 5947818  T
Q  204 gaattaatgcaacaatatgatcaatatcatgatttggttgaacttgatgaaactgtacctgaatta 269  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  5947817 gaattaattcaacaatatgatcaatatcatgatttggttgaacttgatgctactgtgcctgaatta 5947752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 5983481 - 5983362
Alignment:
Q  150 aatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaattgaattaatgcaacaatatgatcaatatcatgatttggttgaacttg 249  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5983481 aatcaatattcaaaaagtgatacgaccccacttaacaaattaatgaacccaattgaattaatgcaacaatatgatcaatatcatgatttggttgaacttg 5983382  T
Q  250 atgaaactgtacctgaatta 269  Q
    |||  ||| | |||||||||    
T  5983381 atgctactatgcctgaatta 5983362  T

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Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 5920416 - 5920176
Alignment:
Q  4 tcaattaccatcataatgcaaatttccttcacattcaaaatccgatgccacataatattgtacaaccaatatctaatctttctacttatgaagatacatg 103  Q
    ||||| ||||| ||||||  ||||||||||||||||||||||| || ||| | ||| ||  ||||||||| ||||||| |||  ||||||||||||||||    
T  5920416 tcaataaccattataatggcaatttccttcacattcaaaatccaataccaga-aatctt--acaaccaatgtctaatccttccccttatgaagatacatg 5920320  T
Q  104 gtcaatagacagtgtagctcttcatcttaacccagtaaatcaagaaaatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaatt 203  Q
    |||| | |   || || |||||||||| || | |   ||||||||||||||| | ||||||||||| || ||||| || |||||| |||| |||||||||    
T  5920319 gtcattgggttgtttacctcttcatctcaatcaa---aatcaagaaaatcaaatctcaaaaagtgataccaccccactcaacaaaataatcaacccaatt 5920223  T
Q  204 gaattaatgcaacaatatgatcaatatcatgatttggttgaacttga 250  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  5920222 gaattaatggaacaatatgttcaatgtcatgatttggttgaacttga 5920176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 5983370 - 5983248
Alignment:
Q  290 cctgaattattaaatcatcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctcctgcgaaaattcagtgct 389  Q
    ||||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  5983370 cctgaattagtcaatcatcaaagccttgaggattatgcttgtaacatcctagattcatctaattcgcaagaacatgaagctccagcgaaaattcagtgct 5983271  T
Q  390 acagtacgtctggtattattcatcca 415  Q
    ||   |||| |||| |||||||||||    
T  5983270 ac---acgtatggtcttattcatcca 5983248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 285 - 412
Target Start/End: Complemental strand, 5947765 - 5947641
Alignment:
Q  285 ctgtacctgaattattaaatcatcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctcctgcgaaaattca 384  Q
    |||| |||||||||   ||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| |||||  | |||||||    
T  5947765 ctgtgcctgaattagccaatcatcaaagccttgaggattacgcttctagcatcctagattcatctaattcccaagaacatgaaactcctcaggaaattca 5947666  T
Q  385 gtgctacagtacgtctggtattattcat 412  Q
    |||||||    |||||||||||||||||    
T  5947665 gtgctac---tcgtctggtattattcat 5947641  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 480
Target Start/End: Complemental strand, 5983225 - 5983156
Alignment:
Q  411 atccattggattacaatattgatgctttcatgtgtatgtcatcattgccatcatcaatcagccaaatagt 480  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| |||| |||| |||||| |||||    
T  5983225 atccattggattacaatattgatgctctcatgtgcatgtcatcattgtcatcctcaagcagccacatagt 5983156  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 5947615 - 5947548
Alignment:
Q  411 atccattggattacaatattgatgctttcatgtgtatgtca---tcattgccatcatcaatcagccaa 475  Q
    |||||||||||||||||||||||||| ||||||||||||||   ||||||||||| |||| |||||||    
T  5947615 atccattggattacaatattgatgctctcatgtgtatgtcatcatcattgccatcctcaagcagccaa 5947548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 5983603 - 5983526
Alignment:
Q  4 tcaattaccatcataatgcaaatttccttcacattcaaaatccgatgccacataatattgtacaaccaatatctaatc 81  Q
    ||||| ||||| ||||||| ||||||| ||||||||||||||| || ||||| ||||| ||||||||||||||| |||    
T  5983603 tcaatgaccattataatgccaatttccctcacattcaaaatccaataccacaaaatatagtacaaccaatatctgatc 5983526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 5886386 - 5886324
Alignment:
Q  306 atcaaagccttgaggattatgcttgtagcatccta---tattcatctaattcccaagaacatg 365  Q
    |||||||||||||||||||||||||||||||||||   ||||||||| ||||| | |||||||    
T  5886386 atcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatg 5886324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 236
Target Start/End: Complemental strand, 5886466 - 5886436
Alignment:
Q  206 attaatgcaacaatatgatcaatatcatgat 236  Q
    |||||||||||||||||||||||||||||||    
T  5886466 attaatgcaacaatatgatcaatatcatgat 5886436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 5841644 - 5841579
Alignment:
Q  306 atcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctc 371  Q
    ||||||||||||||||  ||| |||| |||||||| |||||| | ||||| | |||||||||||||    
T  5841644 atcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctc 5841579  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 5847798 - 5847733
Alignment:
Q  306 atcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctc 371  Q
    ||||||||||||||||  ||| |||| |||||||| |||||| | ||||| | |||||||||||||    
T  5847798 atcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctc 5847733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 5848354 - 5848289
Alignment:
Q  306 atcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctc 371  Q
    ||||||||||||||||  ||| |||| |||||||| |||||| | ||||| | |||||||||||||    
T  5848354 atcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctc 5848289  T

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