View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17271_low_4 (Length: 389)
Name: NF17271_low_4
Description: NF17271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17271_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 27418593 - 27418949
Alignment:
| Q |
11 |
cacagaacttcaactcgtctcgctggaaattgcggattcaacgggatggcacagcagacttggcccgatttttcactcatacttgagtgttttctcttag |
110 |
Q |
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| T |
27418593 |
cacagaacttcaactcgtctcgctggaaattgcggattcaacgggatggcacagcagacttggcccgatttttcactcatacttgagtgttttctcttag |
27418692 |
T |
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| Q |
111 |
tgttttatcaataaatttacgcaataaacttatctttttaattttggaattaattcatataattgaacggattgtgatactttaatactgttctatatat |
210 |
Q |
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| T |
27418693 |
tgttttatcaataaatttacgcaataaacttatctttttaattttggaattaattcatataattgaacggattgtgatactttaatactgttctatatat |
27418792 |
T |
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| Q |
211 |
tagaatttcttgagatctggnnnnnnnnnnnnntaattgaagagttgtgataacattctcattgagggaacattttgtttccgtaggaatgattgataca |
310 |
Q |
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| T |
27418793 |
tagaatttcttgagatctggaaaaaactaaaaataattgaagagttgtgataacattatcattgagggaacattttgtttccgtaggaatgattgataca |
27418892 |
T |
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| Q |
311 |
tggaataaacaaaatgnnnnnnnntattaataacagaaaaaattgtcatctgagcaa |
367 |
Q |
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| T |
27418893 |
tggaagaaacaaaatgaaaaaaaatattaataacagaaaaaattgtcatctgagcaa |
27418949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 27421729 - 27421800
Alignment:
| Q |
255 |
ttgtgataacattctcattgagggaacattttgtttccgtaggaatgattgatacatggaataaacaaaatg |
326 |
Q |
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| T |
27421729 |
ttgtcatagcattctcattgagggaacattttgtttccataggaatgattgatacatggaagaaacaaaatg |
27421800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 27424312 - 27424376
Alignment:
| Q |
262 |
aacattctcattgagggaacattttgtttccgtaggaatgattgatacatggaataaacaaaatg |
326 |
Q |
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| T |
27424312 |
aacattctcattgagggaacattttgtttccgtaggaatgagtgttacatggcagaaacaaaatg |
27424376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 27411251 - 27411322
Alignment:
| Q |
254 |
gttgtgataacattctcattgagggaacattttgtttccgtaggaatgattgatacatggaataaacaaaatg |
326 |
Q |
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| T |
27411251 |
gttgtcataactttctcattaagggaacattttgtttctgtaggaatgattgatacat-gaagaaacaaaatg |
27411322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 27414100 - 27414171
Alignment:
| Q |
255 |
ttgtgataacattctcattgagggaacattttgtttccgtaggaatgattgatacatggaataaacaaaatg |
326 |
Q |
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| T |
27414100 |
ttgtcataacattctcattaagctaacattttgtttctgtaggaatgattaatacatggcagaaacaaaatg |
27414171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 27571960 - 27571913
Alignment:
| Q |
261 |
taacattctcattgagggaacattttg-tttccgtaggaatgattgat |
307 |
Q |
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| T |
27571960 |
taacattctcattcaggaaacattttgatttccgtaggaatgattgat |
27571913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 27567592 - 27567525
Alignment:
| Q |
261 |
taacattctcattgagggaacatt--ttgtttccgtaggaatgattgatacatggaataaacaaaatg |
326 |
Q |
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| T |
27567592 |
taacattctcattcaggaaacattccctatttccgcaggaatgattaatacatggaaaaaacaaaatg |
27567525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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