View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17272_high_3 (Length: 349)
Name: NF17272_high_3
Description: NF17272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17272_high_3 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 27 - 327
Target Start/End: Original strand, 23426826 - 23427134
Alignment:
| Q |
27 |
tcatgtaagtatgacctcagccaaagaactcttacacctacacacactgg---------caagcagaatgatattcaattaagaagtatgagaaatccac |
117 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23426826 |
tcatggaagtatgacctcagcaaaagaactcttacacctacacacagtggaggtatttgcaagcaggatgatattcaattaagaagtatgagaaatccac |
23426925 |
T |
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| Q |
118 |
aaccaaggaatcgacattagtagcaccaaacttagacaatcaacttgcaccnnnnnnnnnctctcgaaaagtatggttaaaggagaccacacatgaaagg |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
23426926 |
aactaaggaatcgacattagtagcaccaaacttagacaatcaacttgcac-tttttttttctctcacaaagtatggttaaaggagaccacacatgaaagg |
23427024 |
T |
|
| Q |
218 |
gaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcggtaataagatcctatgttgtctaatagtcaaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
23427025 |
gaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttaatatcggtaataagatcctatgttggctaatagtcaaatt |
23427124 |
T |
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| Q |
318 |
ccatgatgat |
327 |
Q |
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|||||||||| |
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| T |
23427125 |
ccatgatgat |
23427134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 174664 - 174774
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
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| T |
174664 |
aaagtatgattaaaggagaccacccaagaaagagaagagagcctcttaacgagagagaacaagtttgcatgaggatgaaagtcattcttattagtatccg |
174763 |
T |
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| Q |
285 |
taataagatcc |
295 |
Q |
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| T |
174764 |
caataatatcc |
174774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 142544 - 142654
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
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| T |
142544 |
aaagtatgattaaaggagaccaccaaagaaagagaagagagcctcttaacgagagagaacaagtttgcatgaggatgaaagtcattcttattagtatccg |
142643 |
T |
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| Q |
285 |
taataagatcc |
295 |
Q |
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| T |
142644 |
caataatatcc |
142654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 327
Target Start/End: Complemental strand, 44923214 - 44923075
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
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|||||||| |||| |||||||| |||| ||| ||||| ||| | | | |||||||| ||||||| ||||||| ||||| ||||| || |||||||| |
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| T |
44923214 |
aaagtatgactaaatgagaccacccatggaagagaagaaagctttctaatgagagaaagcaaagttgcatgaggatgaaaatcattttgtttagtatc-- |
44923117 |
T |
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| Q |
285 |
taataagatcctatgttgtctaatagtcaaattccatgatgat |
327 |
Q |
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| T |
44923116 |
-aataagatccgaagttgtctaagagtcagattccatgatgat |
44923075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 20012983 - 20012886
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatc |
282 |
Q |
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|||||||| |||||||||||||| || ||||| ||||| ||| |||| |||||||| | ||| || ||| ||| ||||| ||||||| |||||||| |
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| T |
20012983 |
aaagtatgattaaaggagaccacccaagaaagagaagaaagcctcttaacgagagagagcaagtttgcataaggatgaaagtcattcttattagtatc |
20012886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 16436984 - 16437036
Alignment:
| Q |
110 |
aaatccacaac--caaggaatcgacattagtagcaccaaacttagacaatcaa |
160 |
Q |
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| T |
16436984 |
aaatccacaacttcaagtaatcgatattagtagcaccaaacttagccaatcaa |
16437036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 4415060 - 4415168
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
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|||||||| |||||||||||||| || || ||||||||| || | | ||||||||||||| ||||||| || ||||| || ||||| ||| |||| | |
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| T |
4415060 |
aaagtatgattaaaggagaccacccaaagaaaagaagagagcttcctaatgagagaaaacaaatttccatgtggatgaaagtcgttctgattaatatccg |
4415159 |
T |
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| Q |
285 |
taataagat |
293 |
Q |
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|||||||| |
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| T |
4415160 |
caataagat |
4415168 |
T |
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