View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17272_high_6 (Length: 327)
Name: NF17272_high_6
Description: NF17272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17272_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 17725188 - 17724939
Alignment:
| Q |
21 |
gacatcatcagacatgtagaagcggtgtgtggagggacaatagcaccgatatcctttttgaactcttgtatagcctagaaagacacatttaattgcacga |
120 |
Q |
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| T |
17725188 |
gacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacga |
17725089 |
T |
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| Q |
121 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaata |
220 |
Q |
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| T |
17725088 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaata |
17724989 |
T |
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| Q |
221 |
tggaatggggaaccttgttttggattgcagatgatggcattctattaatc |
270 |
Q |
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| T |
17724988 |
tggaatggggaaccttgttttggattgcagatgatggcattctattaatc |
17724939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 13039793 - 13039536
Alignment:
| Q |
21 |
gacatcatcagacatgtagaagcggtgtgtggagggacaatagcaccgatatcctttttgaactcttgtatagcctagaaagacacatttaattgcacga |
120 |
Q |
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| T |
13039793 |
gacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattttacga |
13039694 |
T |
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| Q |
121 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaata |
220 |
Q |
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| T |
13039693 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaata |
13039594 |
T |
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| Q |
221 |
tggaatggggaaccttgttttggattgcagatgatggcattctattaatcaagtatcc |
278 |
Q |
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| T |
13039593 |
tggaatggggaaccttgttttggattacagatgatggcattctattaatcaagtatcc |
13039536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 272
Target Start/End: Complemental strand, 20705321 - 20705174
Alignment:
| Q |
125 |
acaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaatatgga |
224 |
Q |
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|||| ||||||||||||||| ||||||||||||||| ||||| ||||||||| || ||| |||| ||||||||||||| | ||| || || ||||| |
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| T |
20705321 |
acaacttatctaaacctggaaaaagatcatgaacaaaacaagtacttccaaaaacacgtggattaatatgaaacaaaggttctttaggaaataagatgga |
20705222 |
T |
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| Q |
225 |
atggggaaccttgttttggattgcagatgatggcattctattaatcaa |
272 |
Q |
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| T |
20705221 |
gtgaggaactttgttattgatagaagaagagggcatccgattaatcaa |
20705174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 11025843 - 11025985
Alignment:
| Q |
21 |
gacatcatcagacatgtagaagcggtgtgtggagggacaatagcaccgatatcctttttgaactcttgtatagcctagaaagacacatttaattgcacga |
120 |
Q |
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||||||| || |||||||||||| || || || |||||||||||| ||||||||| | |||||||| || || |||||||||||||||| ||||||| |
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| T |
11025843 |
gacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaatcgctgagaaagacacatttaactgcacga |
11025942 |
T |
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| Q |
121 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagc |
163 |
Q |
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| T |
11025943 |
gcaaacattttatctaaaccttgagtaagatcatgaataaagc |
11025985 |
T |
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