View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17272_high_9 (Length: 323)
Name: NF17272_high_9
Description: NF17272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17272_high_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 29606455 - 29606749
Alignment:
| Q |
29 |
aaccaatagttccaaaaactacaactccaacatctgctcctttgaaaccaccagttccgaaagctcccgcaccaaaaccttctcctgtgaaaccaccagt |
128 |
Q |
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| T |
29606455 |
aaccaatagttccaaaaactacaactccaacatctgctcctttgaaaccaccagttccgaaagctcccgcaccaaaaccttctcctgtgaaaccaccagt |
29606554 |
T |
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| Q |
129 |
tccaaaatcaaaacctccaacaactgctcctgtcaaatcaccagttccggatcctccaaaactcgctcctgtaaagttgccagtcccaaaggttacaccg |
228 |
Q |
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| T |
29606555 |
tccaaaatcaaaacctccaacaactgctcctgtcaaatcaccagttccggatcctccaaaactcgctcctgtaaagttgccagtcccaaaggttacaccg |
29606654 |
T |
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| Q |
229 |
gcattaagcccaaaaaccccatcccctaaaattcaaccaccaccacatccacccaaaaaagcacctgtttctctaccaccattatctataccacc |
323 |
Q |
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| T |
29606655 |
gcattaagcccaaaaaccccatcccctaaaattcaaccaccaccacatccacccaaaaaagcacctgtttctctaccaccattatctataccacc |
29606749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 29606327 - 29606377
Alignment:
| Q |
36 |
agttccaaaaactacaactccaacatctgctcctttgaaaccaccagttcc |
86 |
Q |
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| T |
29606327 |
agttccaaaagctacgactccaacatctgctcctgtgaaaccgccagttcc |
29606377 |
T |
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