View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17272_low_1 (Length: 265)
Name: NF17272_low_1
Description: NF17272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17272_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 31085242 - 31085477
Alignment:
| Q |
15 |
gaagaaaataggaccataggaaatcgaccaatgtaagcatcagcaagaaatccacctattagaggcatcaaggttgttgttcctgcccaatagtttacat |
114 |
Q |
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| T |
31085242 |
gaagaaaataggaccataggaaatcgaccaatgtaagcatcagcaagaaatccacctattagaggcatcaaggttgttgttcctgaccaatagtttacat |
31085341 |
T |
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| Q |
115 |
cctttgctgcagttttgaggtcttcatgcatcaccttagtaaggtatgatataagatttgcagcaattccaaagaagcttaccctttcactaaattcaat |
214 |
Q |
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| T |
31085342 |
tctttgctgcagttttaagatcttcatgcatcaccttagtaaggtatgatataagatttgcagctattccaaagaagcttaccctttcactaaattcaat |
31085441 |
T |
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| Q |
215 |
tgctgcaccacatagaaattaacataatcaccaagt |
250 |
Q |
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| T |
31085442 |
tgctgcaccacatagaaattaacataatcatcaagt |
31085477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 31067945 - 31068157
Alignment:
| Q |
15 |
gaagaaaataggaccataggaaatcgaccaatgtaagcatcagcaagaaatccacctattagaggcatcaaggttgttgttcctgcccaatagtttacat |
114 |
Q |
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| T |
31067945 |
gaagaaaataggatcataggaaatcgaccagtgtaagcatcagcaagaaatccaccaattagaggcatcaaggttgttgttcctgaccaatagtttacat |
31068044 |
T |
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| Q |
115 |
cctttgctgcagttttgaggtcttcatgcatcaccttagtaaggtatgatataagatttgcagcaattccaaagaagcttaccctttcactaaattcaat |
214 |
Q |
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| T |
31068045 |
cctttgctgcagttttgaggtcttcatgcatcaccttagttaggtatgatataagatttgcagctattccaaagaagcttaccctttcactaaattcaat |
31068144 |
T |
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| Q |
215 |
tgctgcaccacat |
227 |
Q |
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| T |
31068145 |
tgctgcaccacat |
31068157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 31059230 - 31059367
Alignment:
| Q |
25 |
ggaccataggaaatcgaccaatgtaagcatcagcaagaaatccacctattagaggcatcaaggttgttgttcctgcccaatagtttacatcctttgctgc |
124 |
Q |
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|||||||| ||||||||||| | || |||||||||| |||||| |||| |||||||| || |||||| |||| ||| |||||||| || || || |
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| T |
31059230 |
ggaccatatgaaatcgaccagtatatgcatcagcaataaatcctcctaccagaggcattaaagttgttactcctatccaggtgtttacatttttagcagc |
31059329 |
T |
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| Q |
125 |
agttttgaggtcttcatgcatcaccttagtaaggtatg |
162 |
Q |
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| T |
31059330 |
tgttttgagatcttcatgaatcacttcagtcaggtatg |
31059367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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