View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17273_high_2 (Length: 504)
Name: NF17273_high_2
Description: NF17273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17273_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 2136253 - 2136569
Alignment:
| Q |
18 |
atccatacacactttactttttctttgaaaggatccatgtaagagaacttgagaactagtagagtttagtgtagtgtactagnnnnnnnnnnnnnnngtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2136253 |
atccatacacactttactttttctttgaaaggatccatgtaagagaacttgagaactagtagagtttagtgtagtgtactagttttttcacttttttgtg |
2136352 |
T |
|
| Q |
118 |
ttatgtgtgtgaatgatgataaagtgggaatttaaagagttaggaaggagtttaatggtgaagtgaaaaaagggtcaaagaaagagttcagagattggtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2136353 |
ttatgtgtgtgaatgatgataaagtgggaatttaaagagttaggaaggagtttaatg-tgaagtgaaaaaagggtcaaagaaagagttcagagattggtt |
2136451 |
T |
|
| Q |
218 |
aaaaggttgaacctttttaaatgaaggcgtgaaggttaaggaaaggatttgattctgtttctctcaaggctgtttcttaaacagaagagggggtgagtga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2136452 |
aaaaggttgaacctttttaaatgaaggcgtgaaggttaaggaaaggatttgattctgtttctctcaaggctgtttcttaaacagaagagggggtgagtga |
2136551 |
T |
|
| Q |
318 |
gaagaaatggtgaacatt |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2136552 |
gaagaaatggtgaacatt |
2136569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 492
Target Start/End: Original strand, 2136648 - 2136721
Alignment:
| Q |
418 |
agccccaataatttaaaacggagatgtacccgtatcggatgttgacattctgcagatacttcaaatacgtaccta |
492 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||||||||| ||| | || ||||||| |||||||||||| |
|
|
| T |
2136648 |
agccccaataatctaaaatg-agatgtacccgtatcggatgttgatattatacatatacttcgaatacgtaccta |
2136721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University