View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17273_high_7 (Length: 339)
Name: NF17273_high_7
Description: NF17273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17273_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 45294286 - 45294618
Alignment:
| Q |
1 |
ggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294286 |
ggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttccttt |
45294385 |
T |
|
| Q |
101 |
cattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294386 |
cattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggt |
45294485 |
T |
|
| Q |
201 |
ttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294486 |
ttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactct |
45294585 |
T |
|
| Q |
301 |
gaacgtctaattgctccttgatcttcatctcac |
333 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
45294586 |
gaacgtctaattgctccttgatcttcttctcac |
45294618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 45303246 - 45303578
Alignment:
| Q |
1 |
ggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303246 |
ggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttccttt |
45303345 |
T |
|
| Q |
101 |
cattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303346 |
cattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggt |
45303445 |
T |
|
| Q |
201 |
ttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303446 |
ttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactct |
45303545 |
T |
|
| Q |
301 |
gaacgtctaattgctccttgatcttcatctcac |
333 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
45303546 |
gaacgtctaattgctccttgatcttcttctcac |
45303578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 45282898 - 45283230
Alignment:
| Q |
1 |
ggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttccttt |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || |||||||||||| |||| || |
|
|
| T |
45282898 |
ggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacagcattaggcataatatttgctctccaattttttcgttg |
45282997 |
T |
|
| Q |
101 |
cattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282998 |
cattttagccaaaagcttgcgatcagaagaagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggt |
45283097 |
T |
|
| Q |
201 |
ttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactct |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283098 |
ttgacatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactct |
45283197 |
T |
|
| Q |
301 |
gaacgtctaattgctccttgatcttcatctcac |
333 |
Q |
| |
|
|||| | |||||||||||||||||| |||||| |
|
|
| T |
45283198 |
gaacatggaattgctccttgatcttcttctcac |
45283230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 45271124 - 45271456
Alignment:
| Q |
1 |
ggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttccttt |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || || ||||||||||||||| |||| || |
|
|
| T |
45271124 |
ggtaagaggcaagagcagcctggatggttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccatccttttcgttg |
45271223 |
T |
|
| Q |
101 |
cattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45271224 |
cattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggt |
45271323 |
T |
|
| Q |
201 |
ttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactct |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||| |
|
|
| T |
45271324 |
ttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactct |
45271423 |
T |
|
| Q |
301 |
gaacgtctaattgctccttgatcttcatctcac |
333 |
Q |
| |
|
|||| | |||||||||||||||||| |||||| |
|
|
| T |
45271424 |
gaacatggaattgctccttgatcttcttctcac |
45271456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 333
Target Start/End: Original strand, 45274659 - 45274989
Alignment:
| Q |
3 |
taagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttcctttca |
102 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || || |||||||||||| |||| || || |
|
|
| T |
45274659 |
taagaggcaagagcagcctggatggttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccaattttttcgttgca |
45274758 |
T |
|
| Q |
103 |
ttttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggttt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45274759 |
ttttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggttt |
45274858 |
T |
|
| Q |
203 |
gatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
45274859 |
gatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctga |
45274958 |
T |
|
| Q |
303 |
acgtctaattgctccttgatcttcatctcac |
333 |
Q |
| |
|
|| | |||||||| ||||| ||| |||||| |
|
|
| T |
45274959 |
acatggaattgctctttgattttcttctcac |
45274989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University