View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17273_high_9 (Length: 282)
Name: NF17273_high_9
Description: NF17273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17273_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 106 - 266
Target Start/End: Original strand, 9073591 - 9073751
Alignment:
| Q |
106 |
caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtcatgatgaacttctcccnnnnn |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9073591 |
caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtcatgatgaacttttcccttttt |
9073690 |
T |
|
| Q |
206 |
nngacaatcttccatctcacctcactgccaatattctgcttcgacttcccgtcaagcctct |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9073691 |
ttgacaatcttccatctcacctcactgccaatattctgcttcgacttcccgtcaagcctct |
9073751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9073486 - 9073531
Alignment:
| Q |
1 |
cgtgtttgattcttagtttctttttcgtcctctatgatatcaatca |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9073486 |
cgtgtttgattcttagtttctttttcgtcctctatgatatcaatca |
9073531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 1599174 - 1599227
Alignment:
| Q |
106 |
caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaaca |
159 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
1599174 |
caacttattgtagtcatgaaaagaaaaaagatttcaattgctgctgcaagaaca |
1599227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 8530165 - 8530097
Alignment:
| Q |
113 |
ttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtc |
184 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
8530165 |
ttgtagtcatgaaaagaaaaaagatttcaattgccgctgcaagagcaaaagttg---atgaggcagagagtc |
8530097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 255
Target Start/End: Original strand, 48360715 - 48360861
Alignment:
| Q |
106 |
caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtcatgatgaacttctcccnnnnn |
205 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||| ||| |
|
|
| T |
48360715 |
caacttattgtagtcatgaaaagtaaaaagatttcaattgccggtgcaagaacaaaagttg---atgaggtagagagtcatgatgaactttgcccttatt |
48360811 |
T |
|
| Q |
206 |
nngacaatcttccatctcacctcactgccaatattctgcttcgacttccc |
255 |
Q |
| |
|
|| |||||||||| ||||||||||||| | ||||| |||| ||||||| |
|
|
| T |
48360812 |
ttgataatcttccatatcacctcactgcccacattctccttcaacttccc |
48360861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 9444333 - 9444258
Alignment:
| Q |
106 |
caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtc |
184 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9444333 |
caacttattgtagtcatgaaaagaaaaaagatttcaattgctgctgcaagaacaaaagttg---atgaggcagagagtc |
9444258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University