View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17273_low_1 (Length: 514)
Name: NF17273_low_1
Description: NF17273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17273_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Original strand, 24245382 - 24245871
Alignment:
| Q |
11 |
cagagaaaatagtgcgttgcgttgaagactcttacacttccatttccatttccatttccatttcatcttccaaaaatgccacgaaaatcaaagaagaaaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24245382 |
cagaaaaaatagtgcgttgcgttgaagactcttacacttccatttccatttccatttccatttcatcttccaaaaatgccacgaaaatcaaagaagaaaa |
24245481 |
T |
|
| Q |
111 |
gggtgtgtaagaagaaactagggtttattcagcaacaacaacaacaagaatggtggaagaaagaagaagatgaaccaaaatgggtcacacattattgcag |
210 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24245482 |
gggtctgtaagaagaaactagggtttattcagcaacaacaacaacaagaatggtggaagaaagaagaagatgaaccaaaatgggtcacacattattgcag |
24245581 |
T |
|
| Q |
211 |
tgatcatcaaatactgttagtgggtgatggcgatttctctttctcactttcacttgcaaaagcttttggttctgcttcaaatatcgttgcttcttcattt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24245582 |
tgatcatcaaatactgttagtgggtgatggcgatttctcattctcactctctcttgcaaaagcttttggttctgcttcaaatatcgttgcttcttcactt |
24245681 |
T |
|
| Q |
311 |
gacacctatggtttttctctgaaccctatttaatttataatgcttaaatagtatgtttgtgtttgtgctttgaacccttttttgtttagtgttaaagttt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24245682 |
gacacctatggtttttctctgaaccctatttaatttataatgcttaaatagtatgtttgtgtttgtgctttgaacccttttttggttagtgttaaagttt |
24245781 |
T |
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| Q |
411 |
tgatatttgaattgaatgcatgnnnnnnnagttgggaaataatgttatagtataatgggtttgattttttgatattgtgatggtgttatt |
500 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24245782 |
tgatctttgaattgaatgcatgtttttttagttgggaaataatgttatagtataatgggtttgattttttgatattgtgatggtgttatt |
24245871 |
T |
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