View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17273_low_10 (Length: 279)
Name: NF17273_low_10
Description: NF17273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17273_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 480134 - 480391
Alignment:
| Q |
6 |
agtgagatgaataagtggagcagtatctattgcattgttgaagggtccaaagctactaataaatgcagagaacataacttcaaagtcaatcatggcaaga |
105 |
Q |
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| T |
480134 |
agtgatatgtataagtggagcagtatctattgcattgttgaagggtccaaagctactaataaatgcagagaacataacttcaaagtcaatcatggcaaga |
480233 |
T |
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| Q |
106 |
ctctctagtaatgatgagaattggttgcttggatgtctttgtcttttaggaaactgtgttgcttggtcaatttggctcattttgcaggtatagtatgtta |
205 |
Q |
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| T |
480234 |
ctctctagtaatgatgagaattggttgcttggatgtctttgtcttttaggaaactgtgttgcttggtcaatttggctcattttgcaggtatagtatgtta |
480333 |
T |
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| Q |
206 |
tttcaatatcaaaacacatatcatatatatgcgttaaggttttggatcaacatgtaat |
263 |
Q |
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| T |
480334 |
tttcaatatcaaaacacatatcatatatatgcgttaaggttttggatcaacatgtaat |
480391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 474801 - 474977
Alignment:
| Q |
20 |
gtggagcagtatctattgcattgttgaagggtccaaagctactaataaatgcagagaacataa---cttcaaagtcaatcatggcaagactctctagtaa |
116 |
Q |
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| T |
474801 |
gtggagcattgtctatagcattgttgaagggtccaaagctactaa---atgcagaaaacatactacctacaaaatctatcatggccataacctccggtag |
474897 |
T |
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| Q |
117 |
tgatgagaattggttgcttggatgtctttgtcttttaggaaactgtgttgcttggtcaatttggctcattttgcaggtat |
196 |
Q |
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| T |
474898 |
tgatgatagttggttgcttggatgtgtgtatcttttgggaagtagtgttgcctggtcactttggctcattttgcaggtat |
474977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 467764 - 467943
Alignment:
| Q |
17 |
taagtggagcagtatctattgcattgttgaagggtccaaagctactaataaatgcagagaacataacttcaaagtcaatcatggcaaga--ctctctagt |
114 |
Q |
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| T |
467764 |
taagtggagcagtgtcaattgcattgttgaagggtccaaa---actactaaatgcagataagatactttcaaaatcaatcatggccacaaccttattagg |
467860 |
T |
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| Q |
115 |
aa-tgatgagaattggttgcttggatgtctttgtcttttaggaaactgtgttgcttggtcaatttggctcattttgcaggtat |
196 |
Q |
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| T |
467861 |
aagtgatgagaattggttgcttggatgtctgtctcttctcggatgcactgttgcttggggaatttttctcattttgcaggtat |
467943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 27491576 - 27491400
Alignment:
| Q |
17 |
taagtggagcagtatctattgcattgttgaagggtccaaagctactaataaatgcagagaacataacttcaaagtcaatcat-ggcaagactctctagta |
115 |
Q |
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| T |
27491576 |
taagtggagcagtgttcattgcactattgaagggtccaaagctgctaa---atgcagaaagcataacttcaaaatcaatcattggcacaac-ct-tagga |
27491482 |
T |
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| Q |
116 |
a-tgatgagaattggttgcttggatgtctttgtcttttaggaaactgtgttgcttggtcaatttggctcattttgcaggtat |
196 |
Q |
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| T |
27491481 |
agtgatgagaattggttgcttggatgtttggttctttttggaagctgtgttgcctggtcagtttggcttattttgcaggtat |
27491400 |
T |
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