View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17273_low_11 (Length: 246)
Name: NF17273_low_11
Description: NF17273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17273_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3417487 - 3417248
Alignment:
| Q |
1 |
agaaaagctcgttttatgggcttcaacataattgtaggatattgaggaaaaataggaaaggtgtggcttnnnnnnnntagtgggtggtataagcatattg |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3417487 |
agaaaaactcgttttatgggcttcaacataattgtaggatattgaggaaaaataggaaaggtgtggcttaaaaaaaatagtgggtggtataagcatattg |
3417388 |
T |
|
| Q |
101 |
aggaaaaacaatatagagatttcaatgagattttagttttatgggccttacaagttaaatgggtactagagagcccataataagtaccttactataatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3417387 |
aggaaaaacaatatagagatttcaatgagattttagttttatgggccttacaagttaaatgggtactagagagcccataataagtaccttactataatta |
3417288 |
T |
|
| Q |
201 |
ttttttaggttatttcttttctgaccctcctttcttctca |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3417287 |
ttttttaggttatttcttttctgaccctcctttcttctca |
3417248 |
T |
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