View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17273_low_12 (Length: 237)
Name: NF17273_low_12
Description: NF17273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17273_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 55036413 - 55036569
Alignment:
| Q |
1 |
agcatgtcatcgtcctttaacacgaaagtgcattgatgagaaatgtgtgtgcatgtaagaggaacaattaagttgaaagataattatgtgttactttaaa |
100 |
Q |
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| T |
55036413 |
agcatgtcatcgtcctttaacacgaaagtgcattgatgagaaatgtgtgtgcatgtaagaggaacaattaagttgaaagataattatgtgttactttaaa |
55036512 |
T |
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| Q |
101 |
ggttataattttatttgtatgtcataattttaacactttaataattcctctcacaat |
157 |
Q |
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| T |
55036513 |
ggttataattttatttgtatgtcataatgttaacactttaataattcctctcacaat |
55036569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 55036574 - 55036620
Alignment:
| Q |
28 |
gtgcattgatgagaaatgtgtgtgcatgtaagaggaacaattaagtt |
74 |
Q |
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| T |
55036574 |
gtgcattgataagaaatgtgtgtgcatgtaagaggaacaattaagtt |
55036620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 55036618 - 55036660
Alignment:
| Q |
179 |
gttcaatttctttggcaatcacaaaagtatcttatcatataat |
221 |
Q |
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| T |
55036618 |
gttcaatttctttgacaatcacaaaagtatcttatcatataat |
55036660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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