View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17273_low_3 (Length: 476)
Name: NF17273_low_3
Description: NF17273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17273_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 77 - 458
Target Start/End: Original strand, 32343603 - 32343984
Alignment:
| Q |
77 |
tcagaaggtgtatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaacactaagc |
176 |
Q |
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| T |
32343603 |
tcagatggtgtatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaacactaagc |
32343702 |
T |
|
| Q |
177 |
atattcctacaaccaaaatgaacttcatctccatgacagtattaatctatgtgactatagtaaaacacacttcacttacacaactttatacaaatatgca |
276 |
Q |
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|||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32343703 |
atatccccacaaccaaaatgaacttcatctccatgacaatattaatctatgtgactatagtaaaacacacttcacttacaccactttatacaaatatgca |
32343802 |
T |
|
| Q |
277 |
ccatatacgcatgcatttatatagtagtttgcatgcatgagaaaatgagcactgaatattcaaatatcaaaatctnnnnnnntaaattgaaatatttaat |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
32343803 |
ccatatacgcatgcatttatatagtagtttgcatgcatgagaaaatgagcactgaatattcaaatatcaaaatgtaaaaaaataaattgaaatatttaat |
32343902 |
T |
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| Q |
377 |
gtccaattgtaggggttaggtttaattgctaccacatacaccacacaatttaccttctcttaccataatagtccagctctat |
458 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32343903 |
gtccaattgtaggggttaggtttaattgctaccacatacaccacacaatttaccttctcttaccataatagtctagctctat |
32343984 |
T |
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