View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17273_low_9 (Length: 282)

Name: NF17273_low_9
Description: NF17273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17273_low_9
NF17273_low_9
[»] chr5 (4 HSPs)
chr5 (106-266)||(9073591-9073751)
chr5 (1-46)||(9073486-9073531)
chr5 (106-159)||(1599174-1599227)
chr5 (113-184)||(8530097-8530165)
[»] chr7 (1 HSPs)
chr7 (106-255)||(48360715-48360861)
[»] chr4 (1 HSPs)
chr4 (106-184)||(9444258-9444333)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 106 - 266
Target Start/End: Original strand, 9073591 - 9073751
Alignment:
Q  106 caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtcatgatgaacttctcccnnnnn 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  9073591 caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtcatgatgaacttttcccttttt 9073690  T
Q  206 nngacaatcttccatctcacctcactgccaatattctgcttcgacttcccgtcaagcctct 266  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9073691 ttgacaatcttccatctcacctcactgccaatattctgcttcgacttcccgtcaagcctct 9073751  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9073486 - 9073531
Alignment:
Q  1 cgtgtttgattcttagtttctttttcgtcctctatgatatcaatca 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9073486 cgtgtttgattcttagtttctttttcgtcctctatgatatcaatca 9073531  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 1599174 - 1599227
Alignment:
Q  106 caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaaca 159  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  1599174 caacttattgtagtcatgaaaagaaaaaagatttcaattgctgctgcaagaaca 1599227  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 8530165 - 8530097
Alignment:
Q  113 ttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtc 184  Q
    ||||||||||||||||||||||| |||||||||  ||||||||| |||||||||   |||||||||||||||    
T  8530165 ttgtagtcatgaaaagaaaaaagatttcaattgccgctgcaagagcaaaagttg---atgaggcagagagtc 8530097  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 255
Target Start/End: Original strand, 48360715 - 48360861
Alignment:
Q  106 caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtcatgatgaacttctcccnnnnn 205  Q
    |||||| |||||||||||||||| |||||| |||||||||  | |||||||||||||||||   |||||| |||||||||||||||||||  |||         
T  48360715 caacttattgtagtcatgaaaagtaaaaagatttcaattgccggtgcaagaacaaaagttg---atgaggtagagagtcatgatgaactttgcccttatt 48360811  T
Q  206 nngacaatcttccatctcacctcactgccaatattctgcttcgacttccc 255  Q
      || |||||||||| ||||||||||||| | ||||| |||| |||||||    
T  48360812 ttgataatcttccatatcacctcactgcccacattctccttcaacttccc 48360861  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 9444333 - 9444258
Alignment:
Q  106 caacttgttgtagtcatgaaaagaaaaaaggtttcaattgatgctgcaagaacaaaagttgataatgaggcagagagtc 184  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||   |||||||||||||||    
T  9444333 caacttattgtagtcatgaaaagaaaaaagatttcaattgctgctgcaagaacaaaagttg---atgaggcagagagtc 9444258  T

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