View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17274_high_11 (Length: 311)

Name: NF17274_high_11
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17274_high_11
NF17274_high_11
[»] chr8 (1 HSPs)
chr8 (21-311)||(36381960-36382250)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 36381960 - 36382250
Alignment:
Q  21 cagggtttcaatgccactcttactgaaccagtggatccttttggaaggggtggtcagattaaagaactagaactaaaagtgcacccagatatgaaggaac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36381960 cagggtttcaatgccactcttactgaaccagtggatccttttggaaggggtggtcagattaaagaactagaactaaaagtgcacccagatatgaaggaac 36382059  T
Q  121 ctttaaagaagctatctgatgacccaaagacaacagtggttgttctgagtgggagtggtagagctgtcctagacaaagtattctttagaaaagtttattt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36382060 ctttaaagaagctatctgatgacccaaagacaacagtggttgttctgagtgggagtggtagagctgtcctagacaaagtattctttagaaaagtttattt 36382159  T
Q  221 gtttttcaatgttcagcaacatttgcttttgtaagaaataacaactattttatgcagaactttggtgaatacaatatgtggtcggcagcag 311  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  36382160 gtttttcaatgttcagcaacatttgcttttgtaataaataacaactatttcatgcagaactttggtgaatacaatatgtggttggcagcag 36382250  T

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