View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_high_12 (Length: 308)
Name: NF17274_high_12
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 2385723 - 2385420
Alignment:
| Q |
8 |
cgaagaatatcttttgtttttctctagagggatgattattttctatatttgaatactgttctgtgaagagtattaatgcatgacaagcaagttcgaaact |
107 |
Q |
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| T |
2385723 |
cgaaaaatatcttttgtttctctctggagggctgatcattttctatatttgaatactgttatgtgaagagtattaatgcatgacaagcaaggtggaaact |
2385624 |
T |
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| Q |
108 |
catgcctataggatgatgcggcaagatcaaattaacgaaatgattacataatcggaaacaatctgtcttgaatattttactttagtatactacacatctt |
207 |
Q |
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| T |
2385623 |
aatgcctataggatgattcggcaagatcaaattgacgaaatgattacttaatcggaaacaagctgtcttgaatattttactttcgtatactac-gatctt |
2385525 |
T |
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| Q |
208 |
acaactatattatctttc----tatgtataaaccttattgctttttgaaaatttctggtaaaagaggagaggaatgggtggctttagattagaatactcg |
303 |
Q |
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| T |
2385524 |
acaactatattatccttctatgtatgtataaaccttattgctttttgaaaatttcaggtaaaagaggagaggacagggtggctttagattggaatactcg |
2385425 |
T |
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| Q |
304 |
aatca |
308 |
Q |
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|||| |
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| T |
2385424 |
gatca |
2385420 |
T |
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