View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_high_18 (Length: 253)
Name: NF17274_high_18
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_high_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 253
Target Start/End: Complemental strand, 3723417 - 3723171
Alignment:
| Q |
7 |
atgtcgaagaatatttggaactatcagctaagacgaaaacctatttttcaactgttgttgccttgtgggatgcagaattttatgtcaaagttgatgatga |
106 |
Q |
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| T |
3723417 |
atgtcgaaggatatttggaactatcagctaagacgaaaacctatttttcaactgttcttgccttgtgggatgcagaattttatgtcaaagttgatgatga |
3723318 |
T |
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| Q |
107 |
tgttcatgtgaatttaggtacattgaaaaattcttctgtgttgacagtttgttttgtttgataaaatacttacttgctccttatatgtatgtaggaaaat |
206 |
Q |
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| T |
3723317 |
tgttcatgtgaatttaggtacattgaaaaattcttctgcgtttacagtttgttttgtttgataaaattcttacttgctccttatatgtatgcaggaaaat |
3723218 |
T |
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| Q |
207 |
tactttgcattgttttataaaagaacaaatgaattagttaaatttat |
253 |
Q |
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| T |
3723217 |
tactttacattgttttataaaagaacaaatgaattagttaaatttat |
3723171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 17124754 - 17124808
Alignment:
| Q |
72 |
tgggatgcagaattttatgtcaaagttgatgatgatgttcatgtgaatttaggta |
126 |
Q |
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| T |
17124754 |
tgggatgctgatttttatgtcaaagttgatgacgatgttcatgtaaatataggta |
17124808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 37186483 - 37186385
Alignment:
| Q |
28 |
tatcagctaagacgaaaacctatttttcaactgttgttgccttgtgggatgcagaattttatgtcaaagttgatgatgatgttcatgtgaatttaggta |
126 |
Q |
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| T |
37186483 |
tatcagcaaagacaaagacctattttgccactgctgttaacttgtgggatgctgacttctatatcaaagttgatgatgatgttcatgtaaatataggta |
37186385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 33084541 - 33084487
Alignment:
| Q |
72 |
tgggatgcagaattttatgtcaaagttgatgatgatgttcatgtgaatttaggta |
126 |
Q |
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| T |
33084541 |
tgggatgctgatttctatgtcaaagtagatgacgatgttcatgtcaatttaggta |
33084487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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