View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_high_2 (Length: 556)
Name: NF17274_high_2
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 191 - 540
Target Start/End: Original strand, 8087450 - 8087818
Alignment:
| Q |
191 |
aattgacaatgatgctccaactcagagtgcttcctgatttactcaaggttctcaattttcactaccacctgatatcatgtccatagttacatttttgagn |
290 |
Q |
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| T |
8087450 |
aattgataatgatgctccaactcagagtgcttcctgatttactcaaggttctcaattttcacaaccacctaatatcatgtccatagttacatttctgagt |
8087549 |
T |
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| Q |
291 |
nnnnnncttcagaaatcaataaaatccagaatgtatgtatcgttgttgctaatttcatacat-------------------tgtatatcattcaatttct |
371 |
Q |
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| T |
8087550 |
ttttttcttcagaaataaataaaatccagaatgtatgtatcgttgttactaatttcatacatcattgtttaatttatacattatatatcattcaatttct |
8087649 |
T |
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| Q |
372 |
actattgttgaacatatcatttcttaatttgtttattatttcaggaaaccatctatgtcactattgcagagataaaaaattgaatgccacccgatatgga |
471 |
Q |
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| T |
8087650 |
actattgttgaacatatcatttcttaatttgtttattatttcacgaaaccatctatgtcactattgcagagataaaaaattgaatgccacccgatatgga |
8087749 |
T |
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| Q |
472 |
tagacgtttcatggatgtaaagactgtaccaaagtttgcaagttggaaaatggaaaatacacatgtatg |
540 |
Q |
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| T |
8087750 |
tagacgtatgatggatgtaaagactgtaccaaagtttgcaacttggaaaatggaaaatacacatgtatg |
8087818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 8084654 - 8084626
Alignment:
| Q |
140 |
atccaatttaatctttctcattcactttt |
168 |
Q |
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| T |
8084654 |
atccaatttaatctttctcattcactttt |
8084626 |
T |
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