View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_high_6 (Length: 384)
Name: NF17274_high_6
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 3722895 - 3722525
Alignment:
| Q |
1 |
aaaattgttgatcaatatgaacattcatcactaacaccctatgttgtttattttttaaatctcagcaacacttggatcgactctgtctatgcaccgtcta |
100 |
Q |
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| T |
3722895 |
aaaattgttgatcaatatgaacattcatcactaacacactatgttgtttattttttaaatctcagcaacacttggatcgactctgtctatgcaccgtcta |
3722796 |
T |
|
| Q |
101 |
aagcctcgtgtgtatgttgggtgcatgaagtctggtcctgtcctttctcagaagtaagaaaatatgaattgtannnnnnnnccagtatgtttaatattat |
200 |
Q |
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| T |
3722795 |
aaacctcgtgtgtatgttgggtgcatgaagtctggtcctgtcctttctcagaagtaagaaaatatgaattgtatcttttttccagtatgtttaatattat |
3722696 |
T |
|
| Q |
201 |
ttcttagggtaactatcttgccacaggggagtgaaataccatgaaccagaatactggaagtttggtgaggttggaaacaagtactttcgtcatgctaccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3722695 |
ttcttagggtaactatcttgccacaggggagtgaaataccatgaaccagaatactggaagtttggtgaggttggaaacaagtactttcgtcatgctaccg |
3722596 |
T |
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| Q |
301 |
gacaattatatgcaatttcacaagatttggcaacttatatatcagtaaatcagtaagttttgttttagttg |
371 |
Q |
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| T |
3722595 |
gacaattatatgcaatttcacaagagttggcaacttatatatcagtaaatcagtaagttttgttttagttg |
3722525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 37185978 - 37185889
Alignment:
| Q |
237 |
taccatgaaccagaatactggaagtttggtgaggttggaaacaagtactttcgtcatgctaccggacaattatatgcaatttcacaagat |
326 |
Q |
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| T |
37185978 |
taccacgaaccagaatactggaaatttggtgagacaggaaacaagtactttcgtcatgccacaggacaactgtatgctgtttcaaaagat |
37185889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 33084117 - 33084017
Alignment:
| Q |
237 |
taccatgaaccagaatactggaagtttggtgaggttggaaacaagtactttcgtcatgctaccggacaattatatgcaatttcacaagatttggcaactt |
336 |
Q |
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||||||||||| |||| ||||||||||| || | |||||||| |||||||| ||||| ||||| || |||||||||| || | |||||||| |||| |
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| T |
33084117 |
taccatgaacctgaattttggaagtttggagaagagggaaacaaatactttcgacatgcaaccgggcagatatatgcaatctctaaggatttggccactt |
33084018 |
T |
|
| Q |
337 |
a |
337 |
Q |
| |
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| |
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|
| T |
33084017 |
a |
33084017 |
T |
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