View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17274_low_1 (Length: 614)
Name: NF17274_low_1
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 11 - 596
Target Start/End: Complemental strand, 37316560 - 37315975
Alignment:
| Q |
11 |
cacagacacgagggctttgacaagtccaaaatggttctagcgaatagggcttttcccactaactaacttatagcgtttattcatgagtttgtgattttag |
110 |
Q |
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| T |
37316560 |
cacacacatgagggctttgacaagtccaaaatggttctagcgaatagggcttttccaactaactaacttatagcgtttattcatgagtttgtgattttag |
37316461 |
T |
|
| Q |
111 |
taaacttcaacaaaaagtcacttgatagcgtggtactgaaacacctatataatactaacttgttattccttcttctgccagaattatagtcaccactaat |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316460 |
taaacttcaacaaaaagtcacttgatagcgtggcactgaaacacctatataatactaacttgttattccttcttctgccagaattatagtcaccactaat |
37316361 |
T |
|
| Q |
211 |
tggtctttggagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatggctcgtgaacaactaggagttctaactgcccttga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316360 |
tggtctttggagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatggctcgtgaacaactaggagttctaactgcccttga |
37316261 |
T |
|
| Q |
311 |
tgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcataccaaatgttacc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316260 |
tgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcataccaaatgttacc |
37316161 |
T |
|
| Q |
411 |
aagttacttggaagaatatattacacacacccaggtgcactcaagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316160 |
aagttacttggaagaatatattacacacacccaggtgcactcaagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtg |
37316061 |
T |
|
| Q |
511 |
gcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagnnnnnnngtttatggtctaactcttgcccttatg |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37316060 |
gcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagaaaaaaagtttatggtctaactcttgcccttatg |
37315975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 176 - 469
Target Start/End: Original strand, 19206901 - 19207188
Alignment:
| Q |
176 |
ttccttcttctgccagaattatagtcaccactaattggtctttggagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatg |
275 |
Q |
| |
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||||||||||| |||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || || |
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| T |
19206901 |
ttccttcttctaccagaac-atagtcaccacta----gtgtttggagcacactataaccaaagactcaattggtcactccaccttcaaaatcta-ccttg |
19206994 |
T |
|
| Q |
276 |
gctcgtgaacaactaggagttctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacag |
375 |
Q |
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|||| |||||| ||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19206995 |
gctcatgaacagctaggagttctaacttctcttcatgcagccaaaacacaatggtaccttttcacagccatcataattgctggtatgggattctgcacag |
19207094 |
T |
|
| Q |
376 |
atgcatatgaccttttctgcataccaaatgttaccaagttacttggaagaatatattacacacacccaggtgcactcaagcctggaactttgcc |
469 |
Q |
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| T |
19207095 |
atgcatatgaccttttctgcataccaaatgttaccaagttacttggaagaatatactacacacacccagatgcactcaagcctggaactttgcc |
19207188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 297 - 394
Target Start/End: Original strand, 38883811 - 38883908
Alignment:
| Q |
297 |
ctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctg |
394 |
Q |
| |
|
|||| ||| ||||||| || ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||| ||||| || ||||| |
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| T |
38883811 |
ctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg |
38883908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 434
Target Start/End: Original strand, 38893003 - 38893140
Alignment:
| Q |
297 |
ctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgca |
396 |
Q |
| |
|
|||| ||| ||||||| || ||||| |||||||| || |||||||| ||||| |||||||| ||||||||||| || ||||| ||||| || ||||||| |
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| T |
38893003 |
ctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatgatctgttctgca |
38893102 |
T |
|
| Q |
397 |
taccaaatgttaccaagttacttggaagaatatattac |
434 |
Q |
| |
|
|| | |||||||||||| || ||| | ||||||||| |
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| T |
38893103 |
tatcccttgttaccaagttgctgggacgcatatattac |
38893140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 547
Target Start/End: Original strand, 38883967 - 38884061
Alignment:
| Q |
453 |
aagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttgg |
547 |
Q |
| |
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||||| || || |||||||| ||||||||||| || || |||||||| ||| ||||||| || || |||| |||||||||||||| |||||||| |
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| T |
38883967 |
aagcccggtacattgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttgg |
38884061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 516 - 562
Target Start/End: Complemental strand, 16175340 - 16175294
Alignment:
| Q |
516 |
ctagcaggccaacttttctttggttggcttggggacaaaatgggaag |
562 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
16175340 |
ctagcaggccaattattctttggttggcttggggacaaaatgggaag |
16175294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 33115133 - 33115203
Alignment:
| Q |
492 |
aatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaag |
562 |
Q |
| |
|
|||||||||||| || |||| | || ||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
33115133 |
aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaag |
33115203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 397
Target Start/End: Original strand, 16223184 - 16223293
Alignment:
| Q |
288 |
ctaggagttctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgacc |
387 |
Q |
| |
|
|||||||| |||| ||| ||||||| ||||| ||||||| ||| || ||||| | || | |||||||| |||||||||||||| ||||||||||| | |
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| T |
16223184 |
ctaggagtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgatc |
16223283 |
T |
|
| Q |
388 |
ttttctgcat |
397 |
Q |
| |
|
|||||||||| |
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|
| T |
16223284 |
ttttctgcat |
16223293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 30621063 - 30620974
Alignment:
| Q |
309 |
gatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcata |
398 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| || | || ||||| ||||| |||||||| |||||||| || || ||||||||| |
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| T |
30621063 |
gatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata |
30620974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 397
Target Start/End: Complemental strand, 9700111 - 9700035
Alignment:
| Q |
321 |
acacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcat |
397 |
Q |
| |
|
||||||||||||||| | ||||| || |||||||||| |||||||||||||| ||||| ||||| || |||||||| |
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|
| T |
9700111 |
acacaatggtaccatgtaacagctatagtaattgctggcatgggattcttcactgatgcctatgatctgttctgcat |
9700035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 16183860 - 16183903
Alignment:
| Q |
354 |
gctggtatgggattcttcacagatgcatatgaccttttctgcat |
397 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
16183860 |
gctggaatgggattcttcactgatgcatatgatcttttctgcat |
16183903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 397
Target Start/End: Complemental strand, 16175567 - 16175459
Alignment:
| Q |
289 |
taggagttctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgacct |
388 |
Q |
| |
|
|||||||||||| ||| || |||| || || ||||||| |||||||||||| | || | || ||||| ||||| |||||||| ||||| ||||| || |
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| T |
16175567 |
taggagttctaaatgcactagatgtggcaaagacacaattgtaccatttcactacaattgtgatagctggaatgggtttcttcactgatgcttatgatct |
16175468 |
T |
|
| Q |
389 |
tttctgcat |
397 |
Q |
| |
|
||||||||| |
|
|
| T |
16175467 |
tttctgcat |
16175459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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