View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_low_12 (Length: 334)
Name: NF17274_low_12
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 4348231 - 4347941
Alignment:
| Q |
1 |
actcatattatctaatatagtgtaaatcttcactgtctttataaaaacatatttatatttcattggttatgcaagtgaagatccttttttagagttgatt |
100 |
Q |
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| T |
4348231 |
actcatattatctaatatagtgtaaatcttcactgtctttataaaaacatatttatatttcattggttatgcaagtgaagatccttttttagagttgatt |
4348132 |
T |
|
| Q |
101 |
tctatgttaaggaaaaataatatgcaaaaaactgaagttataaatatccacaccgggtgaaggtagtgtaaatcttttccatcctattataaagcttgca |
200 |
Q |
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| T |
4348131 |
tctatgttaaggaaaaataatatgcaaaaaactgaagttataaatatccacaccgggtgaaggtagtgtaaatcttttcgatcctattataaagcttgca |
4348032 |
T |
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| Q |
201 |
actcatattatctaatatagtgttaatcttcacttgcctccaggtgtttgctgagtttgctgctgattggggcgctcgagttttggtgctc |
291 |
Q |
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| T |
4348031 |
actcatactatctaatatagtgttaatcttcacttgcctccagctgtttgctgagttcgctgctgattggggcgctcgagttttggtgctc |
4347941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 4348232 - 4348198
Alignment:
| Q |
200 |
aactcatattatctaatatagtgttaatcttcact |
234 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
4348232 |
aactcatattatctaatatagtgtaaatcttcact |
4348198 |
T |
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