View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17274_low_15 (Length: 308)

Name: NF17274_low_15
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17274_low_15
NF17274_low_15
[»] chr5 (1 HSPs)
chr5 (8-308)||(2385420-2385723)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 2385723 - 2385420
Alignment:
Q  8 cgaagaatatcttttgtttttctctagagggatgattattttctatatttgaatactgttctgtgaagagtattaatgcatgacaagcaagttcgaaact 107  Q
    |||| |||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  2385723 cgaaaaatatcttttgtttctctctggagggctgatcattttctatatttgaatactgttatgtgaagagtattaatgcatgacaagcaaggtggaaact 2385624  T
Q  108 catgcctataggatgatgcggcaagatcaaattaacgaaatgattacataatcggaaacaatctgtcttgaatattttactttagtatactacacatctt 207  Q
     |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||  |||||    
T  2385623 aatgcctataggatgattcggcaagatcaaattgacgaaatgattacttaatcggaaacaagctgtcttgaatattttactttcgtatactac-gatctt 2385525  T
Q  208 acaactatattatctttc----tatgtataaaccttattgctttttgaaaatttctggtaaaagaggagaggaatgggtggctttagattagaatactcg 303  Q
    |||||||||||||| |||    ||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||||||    
T  2385524 acaactatattatccttctatgtatgtataaaccttattgctttttgaaaatttcaggtaaaagaggagaggacagggtggctttagattggaatactcg 2385425  T
Q  304 aatca 308  Q
     ||||    
T  2385424 gatca 2385420  T

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