View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_low_17 (Length: 264)
Name: NF17274_low_17
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 5288478 - 5288249
Alignment:
| Q |
18 |
tgattttgttgctcccagtaccttctttcaaggttagttactgatctctgttttactacttgtaatgttgttgatttcgatttttgttatagttaagttg |
117 |
Q |
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| T |
5288478 |
tgattttgttgctcccagtaccttctttcaaggttagttactgatctctgttttactacttgtaatgttgttgatttcgatttttgttttagttaagttg |
5288379 |
T |
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| Q |
118 |
attatatacttactttttatgtcatagaaataaaaccgttgatgaataaactgaaagttttgaataacatatcatcttcacgatcgtcttccactaggac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
5288378 |
attatatacttactttttatgtcatagaaataaaaccgttgatgaataaactgaaagttttgaataacatgtcatctttacgatcgtcttccactaggac |
5288279 |
T |
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| Q |
218 |
tttcaaagctattgctgatccacctaccac |
247 |
Q |
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| T |
5288278 |
ttccaaagctattgctgatccacctaccac |
5288249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 8034935 - 8035081
Alignment:
| Q |
18 |
tgattttgttgctcccagtaccttctttcaaggttagttactgatctctgttttactacttgtaatgttgttgatttcgatttttgttatagttaagttg |
117 |
Q |
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| T |
8034935 |
tgattttgttgctcccagtaccttctttcaaggttggttactgatctctgtattactacttgaaatgttgttgatttcaatttttgttatagtaaagttg |
8035034 |
T |
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| Q |
118 |
attatatacttactttttatgtcatagaaataaaaccgttgatgaat |
164 |
Q |
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| T |
8035035 |
attatatacttacttgaaatgtcatagaaataaaatcgtggatgaat |
8035081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 51380021 - 51379932
Alignment:
| Q |
158 |
gatgaataaactgaaagttttgaataacatatcatcttcacgatcgtcttccactaggactttcaaagctattgctgatccacctaccac |
247 |
Q |
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|||| ||||| | ||||||||||||||||| ||||| |||||| | |||||| |||||| ||| |||||||||||||||||||||||||| |
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| T |
51380021 |
gatggataaattcaaagttttgaataacatgtcatcctcacgaccctcttccgctaggatttttaaagctattgctgatccacctaccac |
51379932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 51380139 - 51380100
Alignment:
| Q |
18 |
tgattttgttgctcccagtaccttctttcaaggttagtta |
57 |
Q |
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| T |
51380139 |
tgattttgttgctcccagtaccttctttcaaggttagtta |
51380100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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