View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_low_26 (Length: 226)
Name: NF17274_low_26
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 4191485 - 4191275
Alignment:
| Q |
18 |
aagtgaaatggaaaactaatttacaagcctttgctcgtaacaacttaatatttctaattgcaatttaatatcaacagtattcagtnnnnnnn--tctcat |
115 |
Q |
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| T |
4191485 |
aagtgaaatggaaaactaatttacaagcctttgctcgtaaatacttaatatttctaattgcaatttaatatcaacagtattcagtaaaaaaaattctcat |
4191386 |
T |
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| Q |
116 |
tgcagacagtaatataacctttttaactaggttggatgttttgcttatgataagatatttttgcatatgtatatagaagacagccgtgttatttagaaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191385 |
tgcagacagtaatataacctttttaactaggttggatgttttgcttatgataagatatttttgcatatgtatatagaagacagccgtgttatttagaaac |
4191286 |
T |
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| Q |
216 |
acgaaagctga |
226 |
Q |
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| T |
4191285 |
acgaaagctga |
4191275 |
T |
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