View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17274_low_4 (Length: 505)

Name: NF17274_low_4
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17274_low_4
NF17274_low_4
[»] chr7 (53 HSPs)
chr7 (17-500)||(140431-140914)
chr7 (39-467)||(10649615-10650046)
chr7 (39-472)||(1882594-1883030)
chr7 (315-467)||(21233076-21233233)
chr7 (65-467)||(18495730-18496134)
chr7 (178-475)||(31493389-31493693)
chr7 (79-280)||(1873159-1873361)
chr7 (63-230)||(8873163-8873330)
chr7 (178-474)||(5530548-5530849)
chr7 (295-489)||(18663023-18663222)
chr7 (270-411)||(11218676-11218822)
chr7 (265-454)||(9500866-9501059)
chr7 (383-465)||(9730937-9731019)
chr7 (383-475)||(4819541-4819633)
chr7 (315-472)||(1873450-1873609)
chr7 (383-494)||(3190360-3190471)
chr7 (383-472)||(10941801-10941890)
chr7 (344-494)||(22338713-22338865)
chr7 (383-475)||(4786497-4786589)
chr7 (383-494)||(12330044-12330155)
chr7 (417-475)||(9131527-9131585)
chr7 (429-494)||(7319055-7319120)
chr7 (344-463)||(5222017-5222139)
chr7 (385-464)||(9313102-9313181)
chr7 (391-494)||(18202510-18202613)
chr7 (39-113)||(3190749-3190823)
chr7 (429-475)||(4987241-4987287)
chr7 (429-475)||(4991339-4991385)
chr7 (45-111)||(7318616-7318682)
chr7 (420-494)||(11218563-11218637)
chr7 (417-475)||(19153943-19154001)
chr7 (417-475)||(20753342-20753400)
chr7 (346-437)||(21501898-21501991)
chr7 (417-494)||(7397867-7397944)
chr7 (178-234)||(17152718-17152774)
chr7 (290-341)||(2348382-2348433)
chr7 (385-464)||(9257072-9257151)
chr7 (428-467)||(13759288-13759327)
chr7 (36-82)||(3329362-3329408)
chr7 (383-462)||(8978332-8978413)
chr7 (417-475)||(10586254-10586312)
chr7 (36-86)||(15869929-15869979)
chr7 (429-475)||(15870327-15870373)
chr7 (17-79)||(16223865-16223927)
chr7 (429-467)||(17152386-17152424)
chr7 (363-417)||(9721591-9721647)
chr7 (259-408)||(13708031-13708186)
chr7 (258-378)||(21884570-21884693)
chr7 (383-475)||(6014260-6014352)
chr7 (36-84)||(10331640-10331688)
chr7 (178-234)||(10586594-10586650)
chr7 (258-338)||(10938166-10938246)
chr7 (39-79)||(16058673-16058713)
[»] chr5 (22 HSPs)
chr5 (39-494)||(24260852-24261309)
chr5 (178-494)||(17170857-17171180)
chr5 (269-494)||(24164347-24164577)
chr5 (344-466)||(17635927-17636051)
chr5 (315-467)||(26066738-26066895)
chr5 (383-475)||(24661893-24661985)
chr5 (383-475)||(18207579-18207671)
chr5 (259-408)||(19762661-19762815)
chr5 (18-110)||(22755837-22755929)
chr5 (260-417)||(23265682-23265844)
chr5 (317-423)||(19085606-19085713)
chr5 (178-467)||(17470603-17470898)
chr5 (65-228)||(19085799-19085958)
chr5 (385-494)||(25401627-25401736)
chr5 (383-472)||(34488324-34488413)
chr5 (383-474)||(24264791-24264882)
chr5 (383-474)||(24341422-24341513)
chr5 (383-460)||(26314360-26314437)
chr5 (263-408)||(9521349-9521499)
chr5 (383-494)||(18831162-18831273)
chr5 (385-467)||(19052036-19052120)
chr5 (423-475)||(18938566-18938618)
[»] chr6 (24 HSPs)
chr6 (17-467)||(23645100-23645551)
chr6 (77-464)||(22565502-22565886)
chr6 (383-494)||(24216215-24216326)
chr6 (178-457)||(2587177-2587463)
chr6 (178-467)||(14725883-14726179)
chr6 (383-475)||(1635677-1635768)
chr6 (178-408)||(9726477-9726712)
chr6 (383-489)||(14078783-14078889)
chr6 (347-467)||(9291408-9291530)
chr6 (39-113)||(21688540-21688614)
chr6 (383-475)||(8245619-8245711)
chr6 (39-111)||(11177270-11177342)
chr6 (422-494)||(19245301-19245373)
chr6 (383-494)||(22409623-22409734)
chr6 (423-494)||(31880057-31880128)
chr6 (39-113)||(28933347-28933421)
chr6 (283-338)||(1635566-1635621)
chr6 (417-475)||(18074678-18074736)
chr6 (423-464)||(6630018-6630059)
chr6 (201-250)||(9291617-9291666)
chr6 (39-112)||(9838690-9838762)
chr6 (383-475)||(4340434-4340526)
chr6 (421-465)||(15467098-15467142)
chr6 (383-467)||(22849829-22849913)
[»] chr1 (28 HSPs)
chr1 (48-467)||(22620609-22621029)
chr1 (20-277)||(32382531-32382790)
chr1 (325-494)||(32382290-32382459)
chr1 (178-494)||(34481413-34481735)
chr1 (313-467)||(16113509-16113668)
chr1 (346-489)||(16787056-16787201)
chr1 (383-494)||(26648333-26648444)
chr1 (383-489)||(17120812-17120917)
chr1 (383-475)||(9402280-9402372)
chr1 (18-162)||(12012455-12012598)
chr1 (383-475)||(31235278-31235370)
chr1 (259-467)||(17442777-17442991)
chr1 (383-494)||(44796064-44796175)
chr1 (417-486)||(9787272-9787341)
chr1 (348-408)||(17837884-17837946)
chr1 (39-113)||(24214869-24214943)
chr1 (179-338)||(15299475-15299635)
chr1 (416-467)||(13266858-13266909)
chr1 (383-494)||(15812449-15812560)
chr1 (39-86)||(28008441-28008488)
chr1 (383-474)||(33191364-33191455)
chr1 (383-472)||(12209260-12209349)
chr1 (39-92)||(14779885-14779938)
chr1 (383-464)||(16360559-16360640)
chr1 (383-452)||(27972545-27972614)
chr1 (259-338)||(10825439-10825520)
chr1 (18-86)||(18100729-18100797)
chr1 (39-79)||(27117443-27117483)
[»] chr2 (33 HSPs)
chr2 (178-467)||(26291542-26291838)
chr2 (178-467)||(45553601-45553896)
chr2 (259-474)||(45621239-45621463)
chr2 (178-474)||(27418692-27418996)
chr2 (383-475)||(13777117-13777209)
chr2 (383-475)||(31804126-31804218)
chr2 (383-467)||(17350038-17350124)
chr2 (344-494)||(16075739-16075896)
chr2 (384-494)||(20171934-20172044)
chr2 (178-474)||(27419838-27420142)
chr2 (383-494)||(15339938-15340049)
chr2 (391-474)||(23011075-23011158)
chr2 (326-399)||(26652688-26652762)
chr2 (381-474)||(25887212-25887304)
chr2 (383-475)||(12950375-12950467)
chr2 (417-489)||(21070903-21070975)
chr2 (383-475)||(22568276-22568368)
chr2 (391-475)||(32086034-32086118)
chr2 (344-408)||(21072159-21072225)
chr2 (385-472)||(25884690-25884777)
chr2 (417-467)||(28765991-28766041)
chr2 (48-113)||(29849673-29849738)
chr2 (295-408)||(25939722-25939840)
chr2 (295-338)||(29031773-29031816)
chr2 (383-473)||(20173955-20174045)
chr2 (178-236)||(21078193-21078251)
chr2 (429-467)||(28605498-28605536)
chr2 (417-475)||(29850051-29850109)
chr2 (44-113)||(20174327-20174396)
chr2 (384-485)||(23006536-23006637)
chr2 (344-418)||(41789975-41790051)
chr2 (39-79)||(28928980-28929020)
chr2 (178-234)||(29027971-29028027)
[»] chr3 (20 HSPs)
chr3 (178-441)||(21018323-21018584)
chr3 (344-486)||(22245939-22246083)
chr3 (341-467)||(13907600-13907728)
chr3 (176-465)||(820857-821149)
chr3 (179-467)||(6290290-6290585)
chr3 (385-467)||(16245045-16245127)
chr3 (383-475)||(3115732-3115824)
chr3 (383-475)||(5509028-5509120)
chr3 (383-486)||(8116269-8116372)
chr3 (391-494)||(19171154-19171257)
chr3 (387-467)||(2166991-2167071)
chr3 (383-475)||(2723169-2723261)
chr3 (383-467)||(41509154-41509238)
chr3 (417-475)||(21326065-21326123)
chr3 (39-92)||(38083893-38083946)
chr3 (345-406)||(314704-314767)
chr3 (178-228)||(20398090-20398140)
chr3 (18-112)||(21325654-21325748)
chr3 (385-488)||(12772224-12772324)
chr3 (383-475)||(8446506-8446598)
[»] chr4 (26 HSPs)
chr4 (324-494)||(25024042-25024217)
chr4 (383-475)||(19635860-19635952)
chr4 (270-403)||(4214958-4215092)
chr4 (383-494)||(9264318-9264429)
chr4 (383-475)||(11781034-11781126)
chr4 (261-467)||(12839123-12839335)
chr4 (75-185)||(12761619-12761729)
chr4 (17-166)||(3775125-3775274)
chr4 (383-475)||(5679898-5679990)
chr4 (417-489)||(14572540-14572612)
chr4 (383-467)||(19092994-19093078)
chr4 (417-489)||(19927840-19927912)
chr4 (18-113)||(14649210-14649305)
chr4 (345-408)||(5529080-5529145)
chr4 (383-460)||(24638788-24638866)
chr4 (383-475)||(5956643-5956735)
chr4 (383-475)||(19604809-19604901)
chr4 (383-474)||(9850760-9850851)
chr4 (428-475)||(17107326-17107373)
chr4 (417-475)||(14649493-14649551)
chr4 (48-110)||(22173241-22173303)
chr4 (347-486)||(26115220-26115359)
chr4 (363-417)||(13587858-13587914)
chr4 (39-112)||(13909192-13909265)
chr4 (429-474)||(17276820-17276865)
chr4 (434-475)||(22351233-22351274)
[»] chr8 (17 HSPs)
chr8 (180-408)||(5052318-5052550)
chr8 (383-475)||(13314314-13314406)
chr8 (178-408)||(24905100-24905336)
chr8 (383-475)||(28276107-28276199)
chr8 (259-338)||(17965561-17965640)
chr8 (178-378)||(17977079-17977283)
chr8 (383-472)||(24584177-24584266)
chr8 (390-466)||(2637696-2637772)
chr8 (39-111)||(14528475-14528547)
chr8 (383-467)||(21315321-21315405)
chr8 (344-426)||(30486849-30486933)
chr8 (432-467)||(17977330-17977365)
chr8 (429-475)||(19787487-19787533)
chr8 (383-494)||(24520954-24521067)
chr8 (446-494)||(6885716-6885764)
chr8 (383-494)||(25181754-25181866)
chr8 (36-92)||(34497448-34497504)
[»] scaffold0001 (1 HSPs)
scaffold0001 (383-475)||(81292-81384)
[»] scaffold0008 (1 HSPs)
scaffold0008 (417-484)||(55590-55657)
[»] scaffold0622 (1 HSPs)
scaffold0622 (48-162)||(1304-1417)
[»] scaffold0134 (1 HSPs)
scaffold0134 (386-475)||(11956-12045)
[»] scaffold0019 (1 HSPs)
scaffold0019 (347-453)||(183831-183939)
[»] scaffold0011 (1 HSPs)
scaffold0011 (384-444)||(156387-156447)
[»] scaffold0005 (3 HSPs)
scaffold0005 (417-489)||(244764-244836)
scaffold0005 (18-113)||(167987-168082)
scaffold0005 (417-475)||(167741-167799)
[»] scaffold0672 (1 HSPs)
scaffold0672 (344-408)||(4513-4579)
[»] scaffold0062 (1 HSPs)
scaffold0062 (417-494)||(42524-42601)
[»] scaffold0386 (1 HSPs)
scaffold0386 (417-475)||(6975-7033)


Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 53)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 140431 - 140914
Alignment:
Q  17 ataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  140431 ataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccgcat 140530  T
Q  117 gttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctagattt 216  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140531 gttaagttatacctactaaccatacgatgatccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctagattt 140630  T
Q  217 ccaaaggtatgatggtcagtattcatgaaggttcctcgtatttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaacc 316  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140631 ccaaaggtatgatggtcagtattcatgaaggttcctcatatttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaacc 140730  T
Q  317 ctatcaacgtctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatcgtgtttccttaattactaactagttacctcttgat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  140731 ctatcaacgtctaccttaccaatggaagagaatggagttactgggttgatttaagtcgtgaagtcgtgtttccttaattactaactagttacctcttgat 140830  T
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttcttctcact 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  140831 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttcttttcact 140914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 39 - 467
Target Start/End: Original strand, 10649615 - 10650046
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatca 138  Q
    |||| ||| ||||||| |||||| ||||| ||| || || |||||||| | | | ||||||||| ||||||||   ||||| |||| ||||||   ||||    
T  10649615 tgcacctgttgatcgctcggtgatcattatgtgcggagtttatactatcttgattgattaaggtttatccctctacatgttgagttgtacctatggatca 10649714  T
Q  139 tacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtat 238  Q
     | ||||| ||||| ||||||||||||||| || |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || | |    
T  10649715 catgatgatccttatgtgtggggtttatctcactcatgggtaattgaaacttaaacttagggtagagttcctagatttcgaaaggtatgatggccaatgt 10649814  T
Q  239 tcatgaaggttc-ctcgtatttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttacca 337  Q
    || ||||||||| ||  | | ||||||||| |||||||||||| | ||||||||||| ||||| || |||  |  |||||||| | ||||||| ||| ||    
T  10649815 tcctgaaggttctcttatctatgaatcttaaaagtacataacacattctctatcttaatagttatataaacagtcaaccctattagcgtctactttatca 10649914  T
Q  338 atggaagagaatggagttactgggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttgatttcagcagattctactcaat 436  Q
    | |||||| |||||||| |||| | |||||||||||||||| || | |||||||||||||||||||||||||  ||||||||||||| ||  |  |||||    
T  10649915 agggaagataatggagtcactgagctgatttaagtcatgaagtcatagtttccttaattactaactagttactacttgatttcagcatatgttcatcaat 10650014  T
Q  437 attagttacgtcacc-tcctaagtacttacta 467  Q
    ||| | || |||||| ||||||||||||||||    
T  10650015 atttggtatgtcaccttcctaagtacttacta 10650046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 39 - 472
Target Start/End: Original strand, 1882594 - 1883030
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatca 138  Q
    |||| |||||| ||||||||||| | |||||||   ||| |||||||| | ||||||||||||||||| ||||||  |||| |||| ||| || | ||||    
T  1882594 tgcacctgctggtcgcacggtgatccttacgtgcaaggtttatactatcttggtcgattaaggtctatacctccgcctgttgagttgtacttattgatca 1882693  T
Q  139 tacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtat 238  Q
     ||||| | | |||||| |   |||||||| || ||   |||||||||||||||||||| |||||| |||| ||| || |||||||||||||| |||| |    
T  1882694 cacgatcatctttacgtatacagtttatctcactcaaaggtaattgaaacataaacttatggtagatttccaagaattgcaaaggtatgatggccagtgt 1882793  T
Q  239 tcatgaaggttc-ctcgtatttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttacca 337  Q
    || ||||||||| ||| | | || ||||||||||||||||||| || |||| ||||||||||| || ||| ||  | || |||||  || |||||||| |    
T  1882794 tcctgaaggttctctcatttatggatcttagaagtacataacacacactctctcttagtagttctagaaacgggaagccatatcagtgtataccttacaa 1882893  T
Q  338 atggaagagaatggagttactgggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttgatttcagcagattctactcaat 436  Q
    | | ||||||||||||||| |||| ||||||||||| |||| || | |||||||||||||||||||| ||||  |||||||||| |||||  |  |||||    
T  1882894 aggaaagagaatggagttattgggctgatttaagtcgtgaagtcatagtttccttaattactaactacttactacttgatttcaacagatgttcatcaat 1882993  T
Q  437 attagttacgtcacct-cctaagtacttactaatagg 472  Q
    ||||| || ||||| | || |||||||||||| ||||    
T  1882994 attaggtatgtcacatcccaaagtacttactattagg 1883030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 467
Target Start/End: Original strand, 21233076 - 21233233
Alignment:
Q  315 ccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacc 409  Q
    |||||||| ||||||||||||||| |   || ||||||||| |||||||||||||||||||| |||| ||   |||||| |||||||||||||||||||     
T  21233076 ccctatcagcgtctaccttaccaaagtacgaggagaatggaattactgggttgatttaagtcgtgaagtcacttgtttcgttaattactaactagttaca 21233175  T
Q  410 tcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    || |  |||||||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  21233176 tcctactttcagcaaattttactcaatattagttatgtcacctcctaagtacttacta 21233233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 467
Target Start/End: Original strand, 18495730 - 18496134
Alignment:
Q  65 ttacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggttt 164  Q
    ||||||| |||||||||||| |  ||||||||||  || ||||||||||  |||| |||| ||| |  | |||| | | ||| | ||||||||||||||     
T  18495730 ttacgtgcggggtctatactttcacggtcgattacagtttatccctccgcctgttgagttgtacttgttgatcacatggtgatctttacgtgtggggtt- 18495828  T
Q  165 atctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggtt-cctcgtatttgaat 263  Q
    |||| || || | |||||||||||||||||||| | | ||||||||| |||||| ||||||||||||  | | ||||| |||||| |||| | | |||||    
T  18495829 atctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgaat 18495928  T
Q  264 cttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttactgggtt 363  Q
    ||||||| ||||||| | | ||||  ||||||||||| | |||| ||  | |||||||| | ||||  ||  ||| | ||||||||||||||| |||| |    
T  18495929 cttagaaatacataagacattctccctcttagtagttctgcaaacgggcagccctatcagcatctattttgtcaaggaaagagaatggagttattgggct 18496028  T
Q  364 gatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacc-tcctaagtac 461  Q
     ||||||||| |||| || | |||| ||||||||||||||| ||||  |||||||| |||||||  |  || ||||||| || |||||| || |||||||    
T  18496029 tatttaagtcgtgaagtcatagttttcttaattactaactacttactacttgatttaagcagatgttcatcgatattaggtatgtcaccttcttaagtac 18496128  T
Q  462 ttacta 467  Q
    ||||||    
T  18496129 ttacta 18496134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 178 - 475
Target Start/End: Original strand, 31493389 - 31493693
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaagg--ttcctcgtatttgaatcttagaagtaca 275  Q
    |||||||||||||| ||||| | | ||||| ||| ||||||||||||||||||| |||| ||| |||| |  || | | | | |||||||||| ||||||    
T  31493389 gtaattgaaacatagacttaagttggagtttctaaatttccaaaggtatgatggccagtgttcctgaaaggttttcccatctatgaatcttaggagtaca 31493488  T
Q  276 taacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa---tggaagagaatggagttactgggttgatttaagt 372  Q
    ||||| ||||||  ||||||||||| ||||||  |  | ||||||||||||||||||||||||   | || |||||||||||| ||| |  |||||||||    
T  31493489 taacacactctccctcttagtagttctacaaacaggcagccctatcaacgtctaccttaccaaggtttgaggagaatggagttgctgagccgatttaagt 31493588  T
Q  373 catgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaata 470  Q
    | ||||||  | |||||||||||||| |||||||||||  | |   ||||  | ||| |||||||||||||| |  | ||||| ||||||||||||| ||    
T  31493589 cttgaaatcacttgtttccttaattaataactagttacaacctatgttcaataaattttactcaatattagtaatattacctcttaagtacttactacta 31493688  T
Q  471 gggtc 475  Q
    |||||    
T  31493689 gggtc 31493693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 79 - 280
Target Start/End: Original strand, 1873159 - 1873361
Alignment:
Q  79 tatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacccatgag 178  Q
    |||||||| | ||||||||||||||||| ||||||  |||| |||| ||| |  | |||| ||||| | | ||||||||| ||||||||| || || | |    
T  1873159 tatactatcttggtcgattaaggtctatacctccgcctgttgagttgtacgtgttgatcacacgatcatctttacgtgtgcggtttatctcactcaaggg 1873258  T
Q  179 taattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacata 277  Q
    ||||||||||||||||  | |||||| |||||||| ||||||||||||||||| |||| ||| ||||||||| ||| | | || ||||||||||| ||||    
T  1873259 taattgaaacataaacaaatggtagatttcctagaattccaaaggtatgatggccagtgttcctgaaggttctctcatttatggatcttagaagttcata 1873358  T
Q  278 aca 280  Q
    |||    
T  1873359 aca 1873361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 230
Target Start/End: Original strand, 8873163 - 8873330
Alignment:
Q  63 cattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggt 162  Q
    |||||| ||| ||||||||||  | | |||||||| ||||||||| |||||  |||| |||| ||||| || |||| | | ||| ||||| ||||| |||    
T  8873163 cattacatgtagggtctataccgtcttggtcgatttaggtctatctctccgcctgttgagttgtacctgctgatcacatggtgatccttatgtgtgtggt 8873262  T
Q  163 ttatctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 230  Q
    || ||| ||  | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  8873263 ttgtctcactgaggagtaattgaaacataaacataggatagagttcctagatttccaaaggtatgatg 8873330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 474
Target Start/End: Original strand, 5530548 - 5530849
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttcctcgtatttgaatcttagaagtacata 277  Q
    |||||| |||||||||||||   | | ||||||| ||||||||| ||||| ||| |||| ||| | || |||   | | | ||||||||| | |||||||    
T  5530548 gtaattaaaacataaacttaaattggcgttcctaaatttccaaatgtatgttggccagtgttcctaaatgttttccatctatgaatcttatatgtacata 5530647  T
Q  278 acatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtca 374  Q
    ||| ||||||  |||  |||||| |||||| ||  | |||||||  | ||||||||||||| |   |  ||||||||||||| |||| |||||||||||     
T  5530648 acacactctccctctcggtagttctacaaatgggcacccctatcggcatctaccttaccaaggtgcgtggagaatggagttattgggctgatttaagtcg 5530747  T
Q  375 tgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagg 472  Q
    ||||  |   ||||||||||||||||||||||||||  | |||||||||||||||    ||||||||||||| |||  ||||||||||||||||| ||||    
T  5530748 tgaagccacttgtttccttaattactaactagttactgcctgatttcagcagatttgcatcaatattagttatgtcgactcctaagtacttactattagg 5530847  T
Q  473 gt 474  Q
    ||    
T  5530848 gt 5530849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 489
Target Start/End: Original strand, 18663023 - 18663222
Alignment:
Q  295 gtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtcatgaaatcg--tgtttcc 389  Q
    |||||| |||||| ||| |||||||||| ||||||||||||||| |   || || |||| || | |||||||||||||||||||||| ||   || || |    
T  18663023 gtagttctacaaacggacaaccctatcagcgtctaccttaccaaggtttgaggataatgaagatgctgggttgatttaagtcatgaagtcacatgctttc 18663122  T
Q  390 ttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggt 489  Q
    ||||||| ||||||||||| || |   |||| |||| | |||||||||||||| | ||||||||||||||| |||||| ||| ||| ||| |||||||||    
T  18663123 ttaattaataactagttacatcctatgttcaacagactttactcaatattagtaatgtcacctcctaagtatttactactagagtcaactcactttcggt 18663222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 11218822 - 11218676
Alignment:
Q  270 agtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgat 366  Q
    ||||||||||| ||||||  | | ||||||| |||||| ||  | |||||||| ||| ||||||||||| |   || ||||||||||| |||||| ||||    
T  11218822 agtacataacacactctccttatcagtagttctacaaacgggaagccctatcagcgtataccttaccaaggtgcgaggagaatggagtaactgggctgat 11218723  T
Q  367 ttaagtcatgaaatcg--tgtttccttaattactaactagttacctc 411  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||    
T  11218722 ttaagtcatgaagtcgcttgtttccttaattactaactagttacctc 11218676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 454
Target Start/End: Original strand, 9500866 - 9501059
Alignment:
Q  265 ttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactggg 361  Q
    |||||||||||||||| ||||||  |||  |||||| |||||| ||  | |||||||||||||||||||||||| |   || ||||||||||||| ||||    
T  9500866 ttagaagtacataacaaactctccctctcggtagttctacaaacggcca-ccctatcaacgtctaccttaccaaggtgcgaggagaatggagttattggg 9500964  T
Q  362 ttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcc 454  Q
     || |||||||| |||| ||   |||||| ||||||||||||||||||   | ||||||||||||||  |  |||||||||| || |||||||||    
T  9500965 atggtttaagtcgtgaagtcacttgtttcattaattactaactagttataacctgatttcagcagatgttcatcaatattaggtatgtcacctcc 9501059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 465
Target Start/End: Complemental strand, 9731019 - 9730937
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttac 465  Q
    |||||||||||||| |||||||||||||| |    |||||||||| |||||||||||||| | ||||||||||||||||||||    
T  9731019 tgtttccttaattattaactagttacctcctaggctcagcagattttactcaatattagtaatgtcacctcctaagtacttac 9730937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 4819541 - 4819633
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| |||||||||||||| |   || |||| ||| |||||||||||||| | |||||||||| ||||||||||| |||||||    
T  4819541 tgtttccttaattattaactagttacctcctaggtttagcaaattttactcaatattagtaatgtcacctccttagtacttactactagggtc 4819633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 315 - 472
Target Start/End: Original strand, 1873450 - 1873609
Alignment:
Q  315 ccctatcaacgtctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctctt 413  Q
    ||||||||  || ||||||||||| | ||||||  ||||||| |||| ||||||||||| |||| || | |||||||||||||||||||| ||||  |||    
T  1873450 ccctatcagtgtataccttaccaaggaaagagagcggagttattgggctgatttaagtcgtgaagtcatagtttccttaattactaactacttactactt 1873549  T
Q  414 gatttcagcagattctactcaatattagttacgtcacct-cctaagtacttactaatagg 472  Q
    ||||||| |||||  |  |||||||||| || ||||| | || |||||||||||| ||||    
T  1873550 gatttcaacagatgttcatcaatattaggtatgtcacatcccaaagtacttactattagg 1873609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 494
Target Start/End: Complemental strand, 3190471 - 3190360
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    ||||||| |||||| ||||||||||| || |   |||| || ||| |||||||||||||| | |||||||||||||||||||||| ||||||| |||  |    
T  3190471 tgtttccctaattaataactagttacatcatatgttcaacatattttactcaatattagtaatgtcacctcctaagtacttactactagggtcaactcgc 3190372  T
Q  483 tttcggtttctt 494  Q
    ||||||| ||||    
T  3190371 tttcggtatctt 3190360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 472
Target Start/End: Complemental strand, 10941890 - 10941801
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagg 472  Q
    |||||||||||||| |||||||||||||| |   |||| |||||| |||||||||| ||| |  ||||||||||||||||||||| ||||    
T  10941890 tgtttccttaattattaactagttacctccttggttcaacagattttactcaatatcagtaatatcacctcctaagtacttactactagg 10941801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 494
Target Start/End: Complemental strand, 22338865 - 22338713
Alignment:
Q  344 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 441  Q
    ||||||||||||||| || |||| ||| ||||||| ||   |||||| ||||||||||  ||||||| || |  |||| | ||||| || ||||||||||    
T  22338865 gagaatggagttactaggatgatataaatcatgaagtcacttgtttcattaattactatttagttacatcctagtttctgaagattttattcaatattag 22338766  T
Q  442 ttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    | | ||||||||||||||||||||||  |||||| | | |||||| |||||||    
T  22338765 tcatgtcacctcctaagtacttactaccagggtccagtcactttcagtttctt 22338713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 4786497 - 4786589
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| |||||| ||| ||| |   ||||||| ||| |||||||||||||| | |||||||||| ||||||||||| |||||||    
T  4786497 tgtttccttaattattaactaattatctcctaggttcagcaaattttactcaatattagtaatgtcacctccttagtacttactactagggtc 4786589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 494
Target Start/End: Original strand, 12330044 - 12330155
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    |||||||||||| |||||||||||||||| |   ||||| ||||| ||||   ||||| | | |||||||||||||||||||||| ||||||| |||  |    
T  12330044 tgtttccttaatcactaactagttacctcataggttcagtagattttactgcgtattattaatgtcacctcctaagtacttactattagggtcgactcgc 12330143  T
Q  483 tttcggtttctt 494  Q
    ||||||| ||||    
T  12330144 tttcggtatctt 12330155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 9131527 - 9131585
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||| ||||| |||||||||||||| | |||||||||||||||||||||| |||||||    
T  9131527 ttcagtagattttactcaatattagtaatgtcacctcctaagtacttactactagggtc 9131585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 494
Target Start/End: Original strand, 7319055 - 7319120
Alignment:
Q  429 tactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    |||||||||||||| | |||| ||||||||||||||||| ||||||| ||| ||||||||| ||||    
T  7319055 tactcaatattagtaatgtcaactcctaagtacttactactagggtcaactcactttcggtatctt 7319120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 463
Target Start/End: Complemental strand, 5222139 - 5222017
Alignment:
Q  344 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 441  Q
    ||||||| ||||||| || ||||||||| |||||| ||   ||||||||||||||||||||||||||  | ||||||||||  ||  |  ||||||||||    
T  5222139 gagaatgaagttacttggctgatttaagacatgaagtcacttgtttccttaattactaactagttacaacctgatttcagctaatgttcatcaatattag 5222040  T
Q  442 ttacgtcacct-cctaagtactt 463  Q
    ||| ||||| | |||||||||||    
T  5222039 ttatgtcacttgcctaagtactt 5222017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 464
Target Start/End: Original strand, 9313102 - 9313181
Alignment:
Q  385 tttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtactta 464  Q
    ||||| |||||| ||||||||||| ||||   ||||||||||| |||||| ||||||| | |||||||||||| ||||||    
T  9313102 tttccctaattaataactagttacatcttaggttcagcagattttactcagtattagtaatgtcacctcctaaatactta 9313181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 494
Target Start/End: Complemental strand, 18202613 - 18202510
Alignment:
Q  391 taattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtt 490  Q
    |||||| ||||||||||| || |   || |||||||| |||||| ||||| | | |||||||||||||||||||||| ||||||| |||  ||||||||     
T  18202613 taattaataactagttacatcataggtttagcagattttactcagtattaataatgtcacctcctaagtacttactactagggtcaactctctttcggta 18202514  T
Q  491 tctt 494  Q
    ||||    
T  18202513 tctt 18202510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 3190823 - 3190749
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 113  Q
    ||||||||||||||||||| | | | |||||||||||||||||||||| ||| |  ||  |||||||||||||||    
T  3190823 tgcatctgctgatcgcacgataatccttacgtgtggggtctatactatctcgatttatctaggtctatccctccg 3190749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 4987241 - 4987287
Alignment:
Q  429 tactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||    
T  4987241 tactcaatattagtaatgtcacctcctaagtacttactactagggtc 4987287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 4991339 - 4991385
Alignment:
Q  429 tactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||    
T  4991339 tactcaatattagtaatgtcacctcctaagtacttactactagggtc 4991385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 7318616 - 7318682
Alignment:
Q  45 tgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctc 111  Q
    ||||||||||||||||| |  |||||| |||||||||||||| ||||| |||  |||||||||||||    
T  7318616 tgctgatcgcacggtgatccatacgtgcggggtctatactatctcggttgatctaggtctatccctc 7318682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 494
Target Start/End: Complemental strand, 11218637 - 11218563
Alignment:
Q  420 agcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    |||||||| |||| ||||||||||| ||||| ||||||||||||| || ||||||| |||  |||||||| ||||    
T  11218637 agcagattttacttaatattagttatgtcacgtcctaagtacttaatactagggtcaactcgctttcggtatctt 11218563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 19153943 - 19154001
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| ||| |||||||||||||| |  ||||||||||||||||||||| |||||||    
T  19153943 ttcagcaaattttactcaatattagtaatttcacctcctaagtacttactactagggtc 19154001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 20753342 - 20753400
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| ||| |||||||||||||| |  ||||||||||||||||||||| |||||||    
T  20753342 ttcagcaaattttactcaatattagtaatttcacctcctaagtacttactactagggtc 20753400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 437
Target Start/End: Original strand, 21501898 - 21501991
Alignment:
Q  346 gaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaata 437  Q
    ||||||| ||||| || ||||||||||||||||||  | ||| |||| ||||||||||||||||| || || |||||| | ||| |||||||||    
T  21501898 gaatggacttactaggatgatttaagtcatgaaatcacttgtatcctaaattactaactagttacatcctggtttcagtaaattttactcaata 21501991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 494
Target Start/End: Original strand, 7397867 - 7397944
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    |||| |||||| |||||||||||||| | |||||||||||||| ||||||| |||| || ||| | ||||||| ||||    
T  7397867 ttcaacagattttactcaatattagtaatgtcacctcctaagttcttactactaggatcaactcattttcggtatctt 7397944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 17152774 - 17152718
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtca 234  Q
    ||||||||||||||||||||   | | ||||||| ||||||||||||||||||||||    
T  17152774 gtaattgaaacataaacttaaattggtgttcctaaatttccaaaggtatgatggtca 17152718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 2348433 - 2348382
Alignment:
Q  290 tcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatgg 341  Q
    ||||||||||| |||||| ||  |||||||||| ||||||||||||||||||    
T  2348433 tcttagtagttctacaaacgggcaaccctatcagcgtctaccttaccaatgg 2348382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 464
Target Start/End: Complemental strand, 9257151 - 9257072
Alignment:
Q  385 tttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtactta 464  Q
    ||||| |||||| ||||||||||| ||||   ||||||||||| |||||| || |||| | |||||||||||| ||||||    
T  9257151 tttccctaattaataactagttacatcttaggttcagcagattttactcagtactagtaatgtcacctcctaaatactta 9257072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 467
Target Start/End: Complemental strand, 13759327 - 13759288
Alignment:
Q  428 ctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  13759327 ctactcaatattagtaatgtcacctcctaagtacttacta 13759288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 3329408 - 3329362
Alignment:
Q  36 agatgcatctgctgatcgcacggtgaccattacgtgtggggtctata 82  Q
    ||||||| ||||||||| |||||||| | ||||||||||||||||||    
T  3329408 agatgcacctgctgatcacacggtgatccttacgtgtggggtctata 3329362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 462
Target Start/End: Complemental strand, 8978413 - 8978332
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagatt--ctactcaatattagttacgtcacctcctaagtact 462  Q
    |||||||||||||||||||||||||| || |   |||||||||||  ||||||| | ||||| |  ||||||||||||||||    
T  8978413 tgtttccttaattactaactagttacatcctaggttcagcagatttactactcagtcttagtaatctcacctcctaagtact 8978332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 10586312 - 10586254
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||| |||||| |||| ||||||||| | |||||||||||| ||||||||| |||||||    
T  10586312 ttcatcagattttactaaatattagtaatgtcacctcctaaatacttactactagggtc 10586254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 15869929 - 15869979
Alignment:
Q  36 agatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactat 86  Q
    ||||||| |||||||||||| ||||| | |||||||| |||||||||||||    
T  15869929 agatgcacctgctgatcgcatggtgatccttacgtgttgggtctatactat 15869979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 15870327 - 15870373
Alignment:
Q  429 tactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| | |||||||||||| ||||||||| |||||||    
T  15870327 tactcaatattagtaatgtcacctcctaaatacttactattagggtc 15870373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 16223927 - 16223865
Alignment:
Q  17 ataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtct 79  Q
    |||||||||||||||||  || |||| |||||| ||||||||||| | |||| ||||||||||    
T  16223927 ataacctaattagttgtcaagttgcacctgctggtcgcacggtgatccttacatgtggggtct 16223865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 17152424 - 17152386
Alignment:
Q  429 tactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  17152424 tactcaatattagtgatgtcacctcctaagtacttacta 17152386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 9721591 - 9721647
Alignment:
Q  363 tgatttaagtcatgaaatcgt--gtttccttaattactaactagttacctcttgatt 417  Q
    ||||||||||| |||| ||||  |||| |||||||||||||||||||| ||||||||    
T  9721591 tgatttaagtcgtgaagtcgtctgttttcttaattactaactagttacttcttgatt 9721647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 408
Target Start/End: Original strand, 13708031 - 13708186
Alignment:
Q  259 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaa-gggagaaccctatcaacgtctaccttaccaatg-gaa--gagaatggagt 354  Q
    ||||||||||||| ||||| || ||||||  |||| |||||| |||||| |||  ||||||||||  |||||||||||||| | |||   ||| ||||||    
T  13708031 tgaatcttagaagcacatagcacactctccctcttggtagttatacaaacggggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagt 13708130  T
Q  355 tactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 408  Q
    ||||| | | ||||||||| |||| |  | | |||||| |||||||||||||||||    
T  13708131 tactgagcttatttaagtcgtgaagtcacttatttcctcaattactaactagttac 13708186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 378
Target Start/End: Complemental strand, 21884693 - 21884570
Alignment:
Q  258 ttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa---tggaagagaatggagt 354  Q
    |||||||||||||| |||||  | ||||||  ||| ||||||| |||||| |   |||||||| | |||||||||||||||   | || ||||||| |||    
T  21884693 ttgaatcttagaagaacatatgacactctccctctcagtagttctacaaacgtgtaaccctataagcgtctaccttaccaaagttcgaggagaatgaagt 21884594  T
Q  355 tactgggttgatttaagtcatgaa 378  Q
    ||||||| ||| ||||||| ||||    
T  21884593 tactgggctgaattaagtcgtgaa 21884570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 6014260 - 6014352
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| |||||| ||||||||||| || |   ||||  ||||| ||||||||||| || | |||||||||||| ||||||| | |||||||    
T  6014260 tgtttccctaattaataactagttacatcctagcttcaaaagattttactcaatattcgtaaggtcacctcctaactacttacaactagggtc 6014352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 10331640 - 10331688
Alignment:
Q  36 agatgcatctgctgatcgcacggtgaccattacgtgtggggtctatact 84  Q
    |||||||||| ||| || |||||||| | ||||||||||||||||||||    
T  10331640 agatgcatctactggtcacacggtgatccttacgtgtggggtctatact 10331688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 10586650 - 10586594
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtca 234  Q
    ||||||||||||||||||||   | | || |||| ||||||||||||||||||||||    
T  10586650 gtaattgaaacataaacttaaattggtgtgcctaaatttccaaaggtatgatggtca 10586594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 10938166 - 10938246
Alignment:
Q  258 ttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 338  Q
    ||||||||||||||||||||||| ||||||  | |  | |||| |||||| ||  |||||||| | |||||||||||||||    
T  10938166 ttgaatcttagaagtacataacacactctccctttctggagttctacaaacgggtaaccctataatcgtctaccttaccaa 10938246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 16058713 - 16058673
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtct 79  Q
    |||| |||||||||||||||||||| ||||||| |||||||    
T  16058713 tgcacctgctgatcgcacggtgacccttacgtgcggggtct 16058673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 9e-96; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 39 - 494
Target Start/End: Original strand, 24260852 - 24261309
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatca 138  Q
    |||| ||||||||||| |||||| | |||| ||  | ||||||| ||| |||||||||||||| |||||||||||  |||| |||  |||||  | ||||    
T  24260852 tgcagctgctgatcgctcggtgatccttacatgcagagtctataatatctcggtcgattaaggcctatccctccgcctgttgagtcgtacctgttgatca 24260951  T
Q  139 tacgatgacccttacgtgtgggg-tttatctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagta 237  Q
     ||||||| |||||||||||||| ||||||| || || | ||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||     
T  24260952 cacgatgatccttacgtgtgggggtttatctcactcaagggtaattgaaacataaacttagggaagagttcctagatttccaaaggtatgatagccagtg 24261051  T
Q  238 ttcatgaaggttc-ctcgtatttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttacc 336  Q
    ||| ||||||||| ||||| | ||||||||||| ||||||| || ||| | ||||||||||||| |||||| ||  | |||||||| |||||||||||||    
T  24261052 ttcttgaaggttctctcgtctatgaatcttagacgtacatagcacactttatatcttagtagttatacaaacgggtagccctatcagcgtctaccttacc 24261151  T
Q  337 aatggaagagaatggagttactgggttgatttaagtcatgaaatcgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaat 436  Q
     | || ||||||||||||||||| | |||||||| | |||||  |  ||||||||| || ||||||||||| || |||||||||||||||| ||||||||    
T  24261152 gagggtagagaatggagttactgagctgatttaatttatgaagacacgtttccttattttctaactagttagcttttgatttcagcagattttactcaat 24261251  T
Q  437 attagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    | |||||| || |||||||||||||||||||  |||||||| | ||||||||||||||    
T  24261252 aatagttatgttacctcctaagtacttactatcagggtctaatcactttcggtttctt 24261309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 178 - 494
Target Start/End: Complemental strand, 17171180 - 17170857
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaagg--ttcctcgtatttgaatcttagaagtaca 275  Q
    |||| ||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||| ||| | ||||  || | | | | |||||||||| ||||||    
T  17171180 gtaactgaaacataaacttatggtggagttcctaaatttccaaaagtatgatggtcagtgttcctaaagggttttcccatctatgaatcttagcagtaca 17171081  T
Q  276 taacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagt 372  Q
    ||||| ||||||  ||||  ||||| ||||||  |  | |||||||| ||||||||||||||| |   || ||||||||| |||||||  ||||||||||    
T  17171080 taacacactctccctcttgatagttctacaaacaggcagccctatcagcgtctaccttaccaaggtttgaggagaatggaattactggcctgatttaagt 17170981  T
Q  373 catgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaata 470  Q
    |||||| |||  | |||||||||||| ||||||||||| || |   |||| |||||| ||||||| |||||| | |||||||||||||||||||||| ||    
T  17170980 catgaagtcgcctatttccttaattaataactagttacatcctaggttcaacagattttactcaaaattagtaatgtcacctcctaagtacttactacta 17170881  T
Q  471 gggtctactaactttcggtttctt 494  Q
     |||| |||  |||||||| ||||    
T  17170880 tggtcaactcgctttcggtatctt 17170857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 269 - 494
Target Start/End: Complemental strand, 24164577 - 24164347
Alignment:
Q  269 aagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttga 365  Q
    ||||||||| || ||||||  |||||||| || |||||| ||  | |||||||| ||||||||||||||| |   |||||||||||| |||||||| |||    
T  24164577 aagtacatagcacactctccctcttagtacttctacaaatgggcagccctatcagcgtctaccttaccaaggttcgaagagaatggaattactgggctga 24164478  T
Q  366 tttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtactt 463  Q
    ||||||||||||| ||   |||||||||||||| ||||||||||| || |  ||| |||| ||| |||| ||||||||  | |||||||| |||||||||    
T  24164477 tttaagtcatgaagtcacttgtttccttaattaataactagttacatcctatttttagcatattttactaaatattagcaatgtcacctcataagtactt 24164378  T
Q  464 actaatagggtctactaactttcggtttctt 494  Q
    |||| ||||||| |||  |||||||| ||||    
T  24164377 actactagggtcaactcgctttcggtatctt 24164347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 466
Target Start/End: Original strand, 17635927 - 17636051
Alignment:
Q  344 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 441  Q
    |||||| ||||||| |||  |||||||||| |||| ||   |||||||||||||| ||||||||||  || ||||||||||||||| |||||||||||||    
T  17635927 gagaatagagttaccgggcagatttaagtcgtgaagtcacttgtttccttaattattaactagttatatcctgatttcagcagattttactcaatattag 17636026  T
Q  442 ttacgtcacctcctaagtacttact 466  Q
    ||| ||||| ||||||||| |||||    
T  17636027 ttatgtcacgtcctaagtaattact 17636051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 315 - 467
Target Start/End: Original strand, 26066738 - 26066895
Alignment:
Q  315 ccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacc 409  Q
    |||||||| |||||| |||||||| |   || |||||||||||||||    ||||||||||| |||| |  | ||||||||||| |||||| |||||||     
T  26066738 ccctatcagcgtctaacttaccaaggtgcgaggagaatggagttactacactgatttaagtcgtgaagtaacttgtttccttaagtactaattagttact 26066837  T
Q  410 tcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
     | ||||||||||| ||| |  ||||||||||||| ||||||||||||||||||||||    
T  26066838 acctgatttcagcatattttcatcaatattagttatgtcacctcctaagtacttacta 26066895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 24661985 - 24661893
Alignment:
Q  383 tgtttccttaattactaactagttacctctt-gatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| |||||| ||||||||||| || | ||||| |||||||| |||||||||||||| | |||||||||||||||||||||| |||||||    
T  24661985 tgtttccctaattaataactagttacatcctagattt-agcagattttactcaatattagtaatgtcacctcctaagtacttactactagggtc 24661893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 18207671 - 18207579
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| |||||| ||||||||||| ||||   || |||||||| |||||||||||| | | |||||||||||||||||||||| |||||||    
T  18207671 tgtttccctaattaataactagttacatcttaggtttagcagattttactcaatattaataatgtcacctcctaagtacttactactagggtc 18207579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 408
Target Start/End: Complemental strand, 19762815 - 19762661
Alignment:
Q  259 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa--tggaag-agaatggagtt 355  Q
    ||||||||||||||||||  || ||||||  |||  |||||| | |||| ||| | |||||||| |||||||||||||||  || ||| |||||||||||    
T  19762815 tgaatcttagaagtacattgcacactctccctctcggtagttctccaaacggacagccctatcagcgtctaccttaccaaggtgcaagaagaatggagtt 19762716  T
Q  356 actgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 408  Q
    | |||| ||||||||| | |||| |  | ||||||||||||||||||||||||||    
T  19762715 attgggctgatttaagacgtgaagtcacttgtttccttaattactaactagttac 19762661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 22755837 - 22755929
Alignment:
Q  18 taacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccct 110  Q
    ||||||||| ||||||  || ||||||| ||||| ||||||||| | |||||||||||||||||||||| || ||||||| |||| |||||||    
T  22755837 taacctaatcagttgtcaagctgcatctactgattgcacggtgatccttacgtgtggggtctatactatctcagtcgatttaggtttatccct 22755929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 417
Target Start/End: Original strand, 23265682 - 23265844
Alignment:
Q  260 gaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg-gaa--gagaatggagtta 356  Q
    |||||||||||| |||||||| |||||| ||||  |||||| |||||| |   |||||||||||| ||||||||||||| | |||  ||||||| |||||    
T  23265682 gaatcttagaagcacataacacactctccatctcggtagttctacaaacgagcaaccctatcaacatctaccttaccaaggtgaaaggagaatgaagtta 23265781  T
Q  357 ctgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatt 417  Q
     |||| ||||||||||| |||| |  | |||||||||||||| ||||||| ||| || |||||    
T  23265782 ttgggctgatttaagtcgtgaagtcacatgtttccttaattagtaactagctacttcctgatt 23265844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 423
Target Start/End: Complemental strand, 19085713 - 19085606
Alignment:
Q  317 ctatcaacgtctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttga 415  Q
    |||||| | ||||||||||||||| || |||||||||||| || | ||||||||||  |||| || | |||||||||||||||||||| ||||| | |||    
T  19085713 ctatcagcatctaccttaccaatgaaaaagaatggagttaatgtgctgatttaagttgtgaagtcatagtttccttaattactaactacttaccacctga 19085614  T
Q  416 tttcagca 423  Q
    ||||||||    
T  19085613 tttcagca 19085606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 467
Target Start/End: Complemental strand, 17470898 - 17470603
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacat 276  Q
    |||||||||||||||||||| | | |  ||| || ||||||||||||||| ||| || | ||| | ||||||  | | | | |||||||||| |||||||    
T  17470898 gtaattgaaacataaacttaagttggcattcttaaatttccaaaggtatggtggccaatgttcctaaaggttttcccatctatgaatcttaggagtacat 17470799  T
Q  277 aacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtc 373  Q
    |||| ||||||  ||| ||||||| |||||| ||  | ||||||||  |||||||||||||| |   || ||||||| ||||| |||  | ||||||| |    
T  17470798 aacaaactctccctctcagtagttctacaaacgggaatccctatcagtgtctaccttaccaaggtgcgaggagaatgaagttattggactaatttaagac 17470699  T
Q  374 atgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    ||||| |  | |||||||||||||| ||| ||||||| || |   |||| || ||| |||||||||||| | | |  |||||||||| ||||||||    
T  17470698 atgaagtcacttgtttccttaattaataattagttacatcctagattcaacatattttactcaatattaataatgcaacctcctaagcacttacta 17470603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 19085958 - 19085799
Alignment:
Q  65 ttacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggttt 164  Q
    |||| |||||||||| |||||| |||||||||| || | ||||| |||   ||||  |||  |||| || |||| ||| ||| | ||||||||||||| |    
T  19085958 ttacatgtggggtct-tactatctcggtcgatttagatatatccatccacctgttgggttgcacctgctgatcacacggtgatctttacgtgtggggtct 19085860  T
Q  165 atctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga 228  Q
    |||| || ||   |||||||||||||||||||| | ||||||||||| ||| ||||||||||||    
T  19085859 atctcactca---gtaattgaaacataaacttaagttagagttcctaaattaccaaaggtatga 19085799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 494
Target Start/End: Complemental strand, 25401736 - 25401627
Alignment:
Q  385 tttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactt 484  Q
    |||| ||||||| ||||||| |||||| |   || |||| ||| |||||||||||||| | |||||||||||||||||||||| |||| || |||  |||    
T  25401736 tttctttaattattaactagctacctcctaggtttagcaaattttactcaatattagtaatgtcacctcctaagtacttactactaggatcaacttgctt 25401637  T
Q  485 tcggtttctt 494  Q
    ||||| ||||    
T  25401636 tcggtatctt 25401627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 472
Target Start/End: Original strand, 34488324 - 34488413
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagg 472  Q
    ||||||| |||||| ||||||||||| || |   ||||||||||| |||| ||||||||| | ||||||||||||||| |||||| ||||    
T  34488324 tgtttccctaattaataactagttacatcctaggttcagcagattttactgaatattagtaatgtcacctcctaagtatttactactagg 34488413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 24264882 - 24264791
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggt 474  Q
    ||||||| |||||| ||||||||||| || |   |||| || ||| |||||| ||||||| | |||||||||||||||||||||| ||||||    
T  24264882 tgtttccctaattaataactagttacatcattggttcaacaaattttactcagtattagtaatgtcacctcctaagtacttactactagggt 24264791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 24341513 - 24341422
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggt 474  Q
    ||||||| |||||| ||||||||||| || |   |||| || ||| |||||| ||||||| | |||||||||||||||||||||| ||||||    
T  24341513 tgtttccctaattaataactagttacatcattggttcaacaaattttactcagtattagtaatgtcacctcctaagtacttactactagggt 24341422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 460
Target Start/End: Original strand, 26314360 - 26314437
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctac-tcaatattagttacgtcacctcctaagta 460  Q
    ||||||||||||||||||||| ||||  |  ||||||||||||| || | ||||||||||||| |||||||||||||||    
T  26314360 tgtttccttaattactaactacttactaccagatttcagcagat-ctgcatcaatattagttatgtcacctcctaagta 26314437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 408
Target Start/End: Original strand, 9521349 - 9521499
Alignment:
Q  263 tcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg-gaa--gagaatggagttactg 359  Q
    ||||||||||||||| || ||||||  |||  |||||| |||||| ||| |||||||||| ||||||| |||| || | |||  ||||||||||||| |     
T  9521349 tcttagaagtacatagcacactctccctctcggtagttctacaaacggacaaccctatcatcgtctactttacgaaggtgaaaggagaatggagttatta 9521448  T
Q  360 ggttgatttaagtcatgaaatc--gtgtttccttaattactaactagttac 408  Q
       ||||||||||| | || ||   ||||||||||||||||||||||||||    
T  9521449 tactgatttaagtcgtaaagtcaattgtttccttaattactaactagttac 9521499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 494
Target Start/End: Original strand, 18831162 - 18831273
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    ||||||||||||  ||||||||||||||| |    |||||||||| |||||  | ||||| | ||||| |||||||||||||||| |||| || |||  |    
T  18831162 tgtttccttaatctctaactagttacctcctaggctcagcagattttactcggtcttagtaatgtcacttcctaagtacttactactaggttcaactcgc 18831261  T
Q  483 tttcggtttctt 494  Q
    ||||||| ||||    
T  18831262 tttcggtatctt 18831273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 19052036 - 19052120
Alignment:
Q  385 tttccttaattactaactagttacctcttgatttcagcaga--ttctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||||||||||||||| ||||||| ||||   |||||||||  | ||||||| | ||||| | || |||||||||||||||||||    
T  19052036 tttccttaattactaattagttacatcttaggttcagcagagttactactcagtcttagtaatgtaacctcctaagtacttacta 19052120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 475
Target Start/End: Original strand, 18938566 - 18938618
Alignment:
Q  423 agattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||| ||||||| | ||||| | |||||||||||||||||||||| |||||||    
T  18938566 agatactactcagtcttagtaatgtcacctcctaagtacttactactagggtc 18938618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 1e-73; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 467
Target Start/End: Complemental strand, 23645551 - 23645100
Alignment:
Q  17 ataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggat 116  Q
    |||||||||| ||||||  ||||||| || ||||| |||||| || |||||||||||| |||| || ||| || ||||||| |||||||||||| |   |    
T  23645551 ataacctaatcagttgtcaagatgcaccttctgattgcacggagatcattacgtgtggagtctttaatatctcagtcgatttaggtctatcccttcactt 23645452  T
Q  117 gttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctagattt 216  Q
    ||| |||| |||||||| |||| || |||| |||||  |||||| ||||| | || || | ||| ||||||||||||||| |||||||||||||||||||    
T  23645451 gttgagttgtacctactgatcacactatgatccttagatgtgggctttatgtcactcaggcgtatttgaaacataaacttggggtagagttcctagattt 23645352  T
Q  217 ccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaac 315  Q
    |||||| |||||||| | || ||||||||||||| ||| | | ||||||||| |||||||||||| ||||||| ||||||||||| ||||||  |  |      
T  23645351 ccaaagatatgatgggcggtgttcatgaaggttctctcatctatgaatcttataagtacataacacactctctctcttagtagttctacaaacaggcagt 23645252  T
Q  316 cctatcaacgtctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttg 414  Q
    |  |||| |||||||||||| || |||| | |||||||||||| || | | ||||||| || | |  | ||||||||||||| |||||| |||| |||||    
T  23645251 ctaatcagcgtctaccttactaaaggaa-ataatggagttactaggctcaattaagtcgtggagtgatagtttccttaattattaactacttacttcttg 23645153  T
Q  415 atttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  23645152 atttcagcagatgttactcaatattagttatgtcacctcctaagtacttacta 23645100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 77 - 464
Target Start/End: Complemental strand, 22565886 - 22565502
Alignment:
Q  77 tctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacccatg 176  Q
    |||||| ||| ||| |||||| |||||||| |||||   |||| |||| |||||||| |||| ||| ||| |||||| |||||| ||||||| || || |    
T  22565886 tctatattatctcgttcgatttaggtctattcctcc---tgttgagttgtacctactgatcacacggtgatccttacatgtgggatttatctcactcagg 22565790  T
Q  177 agtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtaca 275  Q
     |||||| |||||||||||||| |||||||||||||||||||||| |||||||||  ||| |||  |||||||| ||| | | |||||||||||||||||    
T  22565789 -gtaattcaaacataaacttagtgtagagttcctagatttccaaaagtatgatggctagtgttcccgaaggttctctcatctatgaatcttagaagtaca 22565691  T
Q  276 taacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttactgggttgatttaagtcat 375  Q
    ||  | ||| ||| ||||||||||| ||||||     |||||||| | ||| |||||||||| ||| | | | ||||||||||||| ||||||||||| |    
T  22565690 tagaacactatctctcttagtagttctacaaactatcaaccctattagcgtttaccttacca-tggtaaatagtggagttactgggctgatttaagtcgt 22565592  T
Q  376 gaaatcgt-gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtactta 464  Q
    | | || | |||||||||||||||||||| |||| || | ||||||||||||  |||||||||||||||| || ||||||||||||||||    
T  22565591 ggagtcatagtttccttaattactaactacttacttcctcatttcagcagatgttactcaatattagttatgttacctcctaagtactta 22565502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 383 - 494
Target Start/End: Original strand, 24216215 - 24216326
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||||  | ||||||||  |    
T  24216215 tgtttccttaattactaactagttacctcctgctttcagcagattttactcaatattagttatgtcacctcctcagtacttactaccaaggtctactcgc 24216314  T
Q  483 tttcggtttctt 494  Q
    ||||||||||||    
T  24216315 tttcggtttctt 24216326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 457
Target Start/End: Original strand, 2587177 - 2587463
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttcct-cgtatttgaatcttagaagtacat 276  Q
    |||||||||||||||||||| | | | ||||||| |||||  |||||||| |||||||| ||| | || |||  | | | | |||||||||| |||||||    
T  2587177 gtaattgaaacataaacttaagttggcgttcctaaatttcataaggtatggtggtcagtgttcctaaatgttttttcatctatgaatcttaggagtacat 2587276  T
Q  277 aacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtc 373  Q
    | || ||||||  ||| ||||||| | ||||  || |||||||||| ||||||||||||||| |   || |||||||  |||||| || |||||||||||    
T  2587277 agcacactctccctctcagtagttctccaaacagacaaccctatcagcgtctaccttaccaaggtgcgaggagaatgacgttactaggctgatttaagtc 2587376  T
Q  374 atgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactc-aatattagttacgtcacctcctaa 457  Q
    ||||| ||   |||||||||||||||||||||||||| || || |||||||| ||| ||||| ||||||||| | ||||||||||||    
T  2587377 atgaagtcacttgtttccttaattactaactagttacatcctggtttcagcaaattttactcaaatattagtaatgtcacctcctaa 2587463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 467
Target Start/End: Original strand, 14725883 - 14726179
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacat 276  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||| ||  |||| ||  ||||||||| ||| | | |  || ||||||||||||    
T  14725883 gtaattgaaacataaacttaaattagagttcctagatttccaaaggtatggtgaccagtgtttctgaaggttctctcatctatagattttagaagtacat 14725982  T
Q  277 aacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa---tggaagagaatggagttactgggttgatttaagtc 373  Q
    |||| | |||   |||  ||| || |||||| |   | || ||||||| | |||||||||||   | || ||||||||||||| |||| |||||||  ||    
T  14725983 aacacattcttcctctcggtaattctacaaacgagcagccttatcaacatttaccttaccaaggttcgaggagaatggagttaatgggatgatttatttc 14726082  T
Q  374 atgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacct-cctaagtacttacta 467  Q
     |||| |  | ||||||||||||||||||||| ||||  | ||||||||||||||  |  |||||||||| || ||||||| |||||||||||||||    
T  14726083 gtgaagtcacttgtttccttaattactaactacttactacctgatttcagcagatgttcatcaatattaggtatgtcacctgcctaagtacttacta 14726179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 1635677 - 1635768
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| |||||||||||||| |   ||||||||||| |||||||||||||| | ||||||||||||||| |||||| |||||||    
T  1635677 tgtttccttaatta-taactagttacctcataggttcagcagattttactcaatattagtaatgtcacctcctaagtagttactactagggtc 1635768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 408
Target Start/End: Original strand, 9726477 - 9726712
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga-tggtcagtattcatgaaggttcc-tcgtatttgaatcttagaagtaca 275  Q
    ||||||||||||||||||||   ||||||||||| |||||||||||||||| |   |||| ||| | |||||||| |||| | |||||||||||| ||||    
T  9726477 gtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatgacttcccagtgttcctaaaggttccatcgtctatgaatcttagaaataca 9726576  T
Q  276 taacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaag-agaatggagttactgggttgatttaagtca 374  Q
    ||||| ||||||  |||   ||||| |||||| ||  | |||||||| |||||||||||    || ||| |||||||||||  |||  ||| |||||||     
T  9726577 taacacactctcgttctcgatagttctacaaacgggcagccctatcagcgtctaccttataggtgaaagaagaatggagttcgtggtctgagttaagtcg 9726676  T
Q  375 tgaaat--cgtgtttccttaattactaactagttac 408  Q
    |||| |  | ||||||||||||||||| ||||||||    
T  9726677 tgaagtcacatgtttccttaattactagctagttac 9726712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 14078889 - 14078783
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    ||||| ||||||||||||||||||||||| |  ||||| || ||| || ||| ||||||| | ||||||||||||||||||||||  |||||| |||  |    
T  14078889 tgtttacttaattactaactagttacctcctagtttcaacatattttattcagtattagtaatgtcacctcctaagtacttactacaagggtcaactcgc 14078790  T
Q  483 tttcggt 489  Q
    |||||||    
T  14078789 tttcggt 14078783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 347 - 467
Target Start/End: Complemental strand, 9291530 - 9291408
Alignment:
Q  347 aatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagtta 444  Q
    |||||||||| |||| |||||||||||||||| |  | ||||||||||||||| ||||||||| ||  ||||||| ||||||  |  |||||||||| ||    
T  9291530 aatggagttattgggctgatttaagtcatgaagtcacttgtttccttaattaccaactagtta-ctgctgatttcggcagatgtttatcaatattaggta 9291432  T
Q  445 cgtcacctcc-taagtacttacta 467  Q
     ||||||||| |||||||||||||    
T  9291431 tgtcacctccataagtacttacta 9291408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 21688614 - 21688540
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 113  Q
    |||| ||| |||||||||||||||| ||| ||||||||| |||||||| ||||| |||  |||||||||||||||    
T  21688614 tgcacctgttgatcgcacggtgacccttatgtgtggggtatatactatctcggttgatctaggtctatccctccg 21688540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 8245619 - 8245711
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| ||||||  |||||||||| || |   || |||||||| |||||||||||||| | ||||||||||||||| |||||| |||||||    
T  8245619 tgtttccctaattaaaaactagttacatcctaggtttagcagattttactcaatattagtaaggtcacctcctaagtatttactactagggtc 8245711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 11177270 - 11177342
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctc 111  Q
    |||| ||||| ||||||| |||| | |||||||||||||||||||||| ||||| |||| |||| ||||||||    
T  11177270 tgcacctgcttatcgcacagtgatccttacgtgtggggtctatactatctcggttgatttaggtttatccctc 11177342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 19245301 - 19245373
Alignment:
Q  422 cagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    |||||| |||||||||||||| | ||||| |||||||||||||||| ||||||| |||  |||||||| ||||    
T  19245301 cagattttactcaatattagtaatgtcacttcctaagtacttactactagggtcaactctctttcggtatctt 19245373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 494
Target Start/End: Complemental strand, 22409734 - 22409623
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    |||||||||||||| ||||||||||| || |   ||||| ||||| |||  | ||||||| | |||||||| ||||||||||||| ||||||| |||  |    
T  22409734 tgtttccttaattattaactagttacgtcatagattcagtagattttacgtagtattagtaatgtcacctcttaagtacttactactagggtcaactcgc 22409635  T
Q  483 tttcggtttctt 494  Q
    ||||||| ||||    
T  22409634 tttcggtatctt 22409623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 494
Target Start/End: Complemental strand, 31880128 - 31880057
Alignment:
Q  423 agattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    ||||| ||||||||||||| || |||| ||||||||||||||||| ||||||| |||  |||||||| ||||    
T  31880128 agattttactcaatattaggtatgtcaactcctaagtacttactactagggtcaactctctttcggtatctt 31880057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 28933421 - 28933347
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 113  Q
    |||| ||| |||||||||||||| | |||||||||||||||||||||| ||| | |||  |||| ||||||||||    
T  28933421 tgcacctgttgatcgcacggtgatccttacgtgtggggtctatactatctcgattgatctaggtttatccctccg 28933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 1635566 - 1635621
Alignment:
Q  283 ctctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 338  Q
    |||||| ||||||||||| |||||| ||| |||| ||||| |||||||||||||||    
T  1635566 ctctctctcttagtagttctacaaacggacaaccatatcagcgtctaccttaccaa 1635621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 18074736 - 18074678
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||| ||||   ||||||| | |||||||||||||||||||||| |||||||    
T  18074736 ttcagcagattttacttggtattagtaatgtcacctcctaagtacttactactagggtc 18074678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 6630059 - 6630018
Alignment:
Q  423 agattctactcaatattagttacgtcacctcctaagtactta 464  Q
    ||||| |||||||||||||| | |||||||||||||||||||    
T  6630059 agattttactcaatattagtaatgtcacctcctaagtactta 6630018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 9291666 - 9291617
Alignment:
Q  201 tagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc 250  Q
    |||||||||| |||||||||||||||| ||| |||| ||| |||||||||    
T  9291666 tagagttcctggatttccaaaggtatggtggccagtgttcctgaaggttc 9291617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 9838690 - 9838762
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctcc 112  Q
    |||| |||| ||||||||| ||| | |||||||||||||||||||||  ||||| || | ||||||||||||||    
T  9838690 tgcacctgccgatcgcacgatgatccttacgtgtggggtctatactaactcggttgact-aggtctatccctcc 9838762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 4340434 - 4340526
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||| ||||||| || ||||||||| || |   ||||||||||| |||||| ||||||| | | |||||| ||||||| ||||| |||||||    
T  4340434 tgttttcttaatttctcactagttacatcctaggttcagcagattttactcagtattagtaatgacacctcttaagtacatactactagggtc 4340526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 15467098 - 15467142
Alignment:
Q  421 gcagattctactcaatattagttacgtcacctcctaagtacttac 465  Q
    ||||||| |||||||||||||| | ||||||||||||||| ||||    
T  15467098 gcagattttactcaatattagtaatgtcacctcctaagtatttac 15467142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 467
Target Start/End: Complemental strand, 22849913 - 22849829
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||||| ||||| |||||||||||||||  |   ||||||| ||| |||||| ||||||| | ||| |||||||| |||||||||    
T  22849913 tgtttctttaatcactaactagttaccttctaggttcagcaaattttactcagtattagtaatgtcgcctcctaaatacttacta 22849829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 9e-65; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 48 - 467
Target Start/End: Original strand, 22620609 - 22621029
Alignment:
Q  48 tgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgac 147  Q
    |||||||||| ||| |||||| || ||| || ||||||| |||||||||| |||||||| |||||  ||||| |||| |||||  | |||| | | |||     
T  22620609 tgatcgcacgatgatcattacatgcgggatccatactatctcggtcgatttaggtctattcctccacatgttgagttgtacctgttgatcacaaggtgat 22620708  T
Q  148 ccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaagg 247  Q
    ||||||||||||||||||||| || || | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||| ||||||    
T  22620709 ccttacgtgtggggtttatctcactcaagcgtaattgcaacataaacttagggtagagttcctagatttccaaaggtatgaaggctagtgttcctgaagg 22620808  T
Q  248 ttc-ctcgtatttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagag 346  Q
    ||| ||  | | ||||||||||||||||||| || | | | | ||||| ||||| ||||||  || |||||||||  ||||||||| || || |||| ||    
T  22620809 ttctcttatctctgaatcttagaagtacatatcacaatatttctcttaatagttctacaaacagacaaccctatccgcgtctacctaactaagggaa-ag 22620907  T
Q  347 aatggagttactgggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttac 445  Q
    |||||||||| |||| ||||||||||  |||| || |  ||||||||||||||||||| |||  || ||||||||| ||||  |||||||| |||||||     
T  22620908 aatggagttattgggctgatttaagttctgaagtcttattttccttaattactaactacttatttcctgatttcagtagatgttactcaatcttagttat 22621007  T
Q  446 gtcacctcctaagtacttacta 467  Q
    |||||||| | |||||||||||    
T  22621008 gtcacctcatgagtacttacta 22621029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 32382790 - 32382531
Alignment:
Q  20 acctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgtt 119  Q
    ||||||| ||||||  || ||||||||||||||||||||||| ||||||||| |||||||||||||| |||||  |||||||||||||||||||  ||||    
T  32382790 acctaatcagttgtcaagctgcatctgctgatcgcacggtgatcattacgtgcggggtctatactatctcggttcattaaggtctatccctccgtttgtt 32382691  T
Q  120 aagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctaga-tttcc 218  Q
     |||| ||| |||| |||| || |||| ||||| ||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||| ||| |    
T  32382690 gagttgtacatactgatcacaccatgatccttatgtgtggggtttatctcactcatgggtaattgaaacataaacttcgggtagagttcctagatttttc 32382591  T
Q  219 aaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacata 277  Q
    ||||||||||||| |||| ||| ||||||||| ||  ||| |||||||||||||||||||    
T  32382590 aaaggtatgatggccagtgttcttgaaggttctctaatatatgaatcttagaagtacata 32382531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 325 - 494
Target Start/End: Complemental strand, 32382459 - 32382290
Alignment:
Q  325 gtctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatcgtgtttccttaattactaactagttacctcttgatttcagcag 424  Q
    |||||||||||||| |||||| |||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||     
T  32382459 gtctaccttaccaagggaagaaaatggagttattgggttaacttaagtcatgaagtcgtgtttccttaattactaactagttacctctcgatttcaacat 32382360  T
Q  425 attctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    ||| |||||||||||||||| ||||||||||||||||||||||  ||||| ||||  ||||| |||||||    
T  32382359 attttactcaatattagttatgtcacctcctaagtacttactatcagggtgtacttgctttctgtttctt 32382290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 494
Target Start/End: Original strand, 34481413 - 34481735
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacat 276  Q
    |||||||||||||||||||| | | | ||||||| ||||||||||||||||||  || | ||| | ||||||  | | ||| |||||||||| |||||||    
T  34481413 gtaattgaaacataaacttaagttggcgttcctaaatttccaaaggtatgatgcccaatgttcctaaaggttttcccatatatgaatcttaggagtacat 34481512  T
Q  277 aacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtc 373  Q
    | || |   ||  |||  |||||| ||||||  |  | ||||||||||| ||||||||| ||||   || ||||||| ||||| ||||||||||||||||    
T  34481513 agcacatcatccctctcggtagttctacaaacaggtagccctatcaacgcctaccttacgaatgtgcgaggagaatgcagttattgggttgatttaagtc 34481612  T
Q  374 atgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatag 471  Q
    ||||| ||   |||||||||||||||||||||||||| |||    |||| || ||| ||||||||| |||| | || ||||||||||||||||||| |||    
T  34481613 atgaagtcacttgtttccttaattactaactagttacatctcaggttcaacaaattttactcaataatagtaatgttacctcctaagtacttactactag 34481712  T
Q  472 ggtctactaactttcggtttctt 494  Q
    |||| ||| | ||||||| ||||    
T  34481713 ggtcaactcattttcggtatctt 34481735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 467
Target Start/End: Original strand, 16113509 - 16113668
Alignment:
Q  313 aaccctatcaacgtctaccttaccaatggaagagaa---tggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagtta 407  Q
    |||||||||| ||||||||||||||| |   |||||   |||| ||| ||||||| |||||||| | || ||   |||||||||||||||||||||||||    
T  16113509 aaccctatcagcgtctaccttaccaaggtgtgagaaaaatggatttattgggttgctttaagtcgtaaagtcacttgtttccttaattactaactagtta 16113608  T
Q  408 cctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    | || ||||||||||| ||| |||| |||| || ||| ||||||||||||||||||||||    
T  16113609 catcctgatttcagcaaattttactaaataataattatgtcacctcctaagtacttacta 16113668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 346 - 489
Target Start/End: Complemental strand, 16787201 - 16787056
Alignment:
Q  346 gaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagtt 443  Q
    ||||| ||||| | || |||||||||||||||| ||   |||||||||||||| ||||||||||| ||||   |||| |||||| |||||||||| | |     
T  16787201 gaatgaagttattaggctgatttaagtcatgaagtcacttgtttccttaattaataactagttacatcttaggttcaacagattttactcaatatgatta 16787102  T
Q  444 acgtcacctcctaagtacttactaatagggtctactaactttcggt 489  Q
    | |||||||| ||||||||||||||| |||||||||  ||||||||    
T  16787101 atgtcacctcttaagtacttactaattgggtctactccctttcggt 16787056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 383 - 494
Target Start/End: Complemental strand, 26648444 - 26648333
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    ||||||| ||||  |||||||||||||||||   ||||||||||| |||||| | ||||| | ||||||||| |||||||||||| ||||||| ||| ||    
T  26648444 tgtttccctaatctctaactagttacctctttggttcagcagattttactcagtcttagtaatgtcacctccaaagtacttactactagggtcaactcac 26648345  T
Q  483 tttcggtttctt 494  Q
    ||||||| ||||    
T  26648344 tttcggtatctt 26648333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 17120917 - 17120812
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    ||||||||||||||  |||||||||| || |   |||| |||||| |||||||||||||| | |||||||||||||||||||||| |||||||||||  |    
T  17120917 tgtttccttaattagcaactagttacatcctaggttca-cagattttactcaatattagtaatgtcacctcctaagtacttactactagggtctactcgc 17120819  T
Q  483 tttcggt 489  Q
    |||||||    
T  17120818 tttcggt 17120812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 9402280 - 9402372
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||||||||||||| ||||| |   ||||||| ||| |||| | ||||||| | |||||||||||||||||||||| |||||||    
T  9402280 tgtttccttaattactaactagtcacctcctaggttcagcaaattttacttagtattagtaatgtcacctcctaagtacttactactagggtc 9402372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 12012598 - 12012455
Alignment:
Q  18 taacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatg 117  Q
    ||||||||| ||||||  ||  |||||||||||||||||| ||| | ||||||| |||||||||| ||| |||||||| | ||||||||||||||  |||    
T  12012598 taacctaatcagttgtcaagtcgcatctgctgatcgcacgatgatccttacgtgaggggtctatattatctcggtcgacttaggtctatccctcc-aatg 12012500  T
Q  118 ttaagttatacctactaatcatacgatgacccttacgtgtggggt 162  Q
    || ||||  |||||||| ||| ||  ||| |||||| ||||||||    
T  12012499 ttgagttgcacctactagtcacacagtgatccttacatgtggggt 12012455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 31235370 - 31235278
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||||||||||||||||||| |    |||||||||| |||||| |||| || | ||||||||||||||| |||||| |||||||    
T  31235370 tgtttccttaattactaactagttacctcctaggctcagcagattttactcagtattggtaatgtcacctcctaagtatttactactagggtc 31235278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 467
Target Start/End: Original strand, 17442777 - 17442991
Alignment:
Q  259 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagag---aatggagtt 355  Q
    ||||||||||||||||||| || |||| |  |||  |||||| |||||| ||  |||||||||| ||||||||||||||| | || ||   ||   ||||    
T  17442777 tgaatcttagaagtacatagcacactcgccctctcggtagttctacaaacgggaaaccctatcagcgtctaccttaccaaggtaaaagaaaaacaaagtt 17442876  T
Q  356 actgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctc 453  Q
    |||||| | ||||||||| |||| |  | ||||| ||||||||||||||||||||    ||||||||||||||  |  |||||||||| || ||||| ||    
T  17442877 actgggcttatttaagtcctgaagtcacctgttttcttaattactaactagttactatctgatttcagcagatgttcgtcaatattaggtatgtcacatc 17442976  T
Q  454 -ctaagtacttacta 467  Q
     ||||||||||||||    
T  17442977 tctaagtacttacta 17442991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 494
Target Start/End: Original strand, 44796064 - 44796175
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    ||||||||||||  ||||||||||||||| | | ||||||||||| ||| || | ||||| | ||||||||| ||||||||| || ||||||| |||  |    
T  44796064 tgtttccttaatctctaactagttacctcctaagttcagcagattttacccagtcttagtaatgtcacctccgaagtacttattattagggtcaactcgc 44796163  T
Q  483 tttcggtttctt 494  Q
    ||||||| ||||    
T  44796164 tttcggtatctt 44796175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 9787341 - 9787272
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttc 486  Q
    ||||||||||| ||||||||| |||| | |||||||| ||||||||||||| ||||||| |||| |||||    
T  9787341 ttcagcagattttactcaatactagtaatgtcacctcttaagtacttactactagggtcaactatctttc 9787272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 17837884 - 17837946
Alignment:
Q  348 atggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttac 408  Q
    |||||||||||||| ||||||||||| |||| ||   ||||||||||||||||||||||||||    
T  17837884 atggagttactgggatgatttaagtcgtgaagtcacttgtttccttaattactaactagttac 17837946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 24214869 - 24214943
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 113  Q
    |||| |||||||| ||||||||  | |||||||||||||||||||||| | ||| |||  |||||||||||||||    
T  24214869 tgcacctgctgattgcacggtgggccttacgtgtggggtctatactatcttggttgatctaggtctatccctccg 24214943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 338
Target Start/End: Original strand, 15299475 - 15299635
Alignment:
Q  179 taattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacata 277  Q
    |||||| ||||||||||||   ||||||||||| ||||||||||||||| | |  ||| ||  | ||||||| ||| | | ||| ||||||||||||| |    
T  15299475 taattggaacataaacttaaattagagttcctaaatttccaaaggtatgttagctagtgtttctaaaggttctctcatctatgagtcttagaagtacaca 15299574  T
Q  278 acatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 338  Q
    ||| || |||   ||  |||||| ||||||  || |||||||||| |||||||||||||||    
T  15299575 acacaccctcccactcggtagttctacaaacagacaaccctatcatcgtctaccttaccaa 15299635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 13266858 - 13266909
Alignment:
Q  416 tttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||||||||||| |||| | ||||||| | ||||||||||||||||||||||    
T  13266858 tttcagcagattttactaagtattagtaaagtcacctcctaagtacttacta 13266909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 494
Target Start/End: Complemental strand, 15812560 - 15812449
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    ||||||| ||||  ||||||||||| ||| |   ||||||||||| |||||| | ||||| | || ||||||||||||||||||| || |||| ||| ||    
T  15812560 tgtttccgtaatctctaactagttatctcctaggttcagcagattttactcagtcttagtaatgttacctcctaagtacttactactatggtcaactcac 15812461  T
Q  483 tttcggtttctt 494  Q
    ||| ||| ||||    
T  15812460 ttttggtatctt 15812449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 28008441 - 28008488
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactat 86  Q
    |||| ||||||||||||| |||| | ||||||||||||||||||||||    
T  28008441 tgcacctgctgatcgcacagtgatccttacgtgtggggtctatactat 28008488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 474
Target Start/End: Original strand, 33191364 - 33191455
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggt 474  Q
    ||||||| |||||| ||||||||||| || |   |||| || ||| |||||| ||||||| | ||||||||||||||| |||||| ||||||    
T  33191364 tgtttccctaattaataactagttacatcctaggttcaacatattttactcagtattagtaatgtcacctcctaagtatttactactagggt 33191455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 472
Target Start/End: Original strand, 12209260 - 12209349
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagg 472  Q
    ||||| |||||| |||||||||||| ||| |   ||||| ||||| |||||| ||||||| | |||||| ||||||||| ||||| ||||    
T  12209260 tgtttacttaatcactaactagttatctcctaggttcagaagattttactcagtattagtaatgtcaccacctaagtacctactactagg 12209349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 14779885 - 14779938
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggt 92  Q
    |||| |||||||||||||||||| | ||| || ||||||||||||||| |||||    
T  14779885 tgcacctgctgatcgcacggtgatccttatgtatggggtctatactatctcggt 14779938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 464
Target Start/End: Original strand, 16360559 - 16360640
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtactta 464  Q
    |||||||||| ||| ||||||||||| || |   |||| || ||| |||||||||||||| | ||||||| |||||||||||    
T  16360559 tgtttccttagttaataactagttacatcgtaggttcaacatattttactcaatattagtaatgtcaccttctaagtactta 16360640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 452
Target Start/End: Original strand, 27972545 - 27972614
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacct 452  Q
    ||||||||||| ||||||||||||||||  |   |||| |||||| |||||||||||||| | |||||||    
T  27972545 tgtttccttaactactaactagttaccttatatgttcaccagattttactcaatattagtaatgtcacct 27972614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 10825439 - 10825520
Alignment:
Q  259 tgaatcttagaagtacataacatactctc---tatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 338  Q
    |||||||||||||| ||||||| ||||||   || |||||||||| |||||| ||| |||||||||  | |||||||||||||    
T  10825439 tgaatcttagaagttcataacacactctctcttaccttagtagttctacaaacggacaaccctatc-ccatctaccttaccaa 10825520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 18100797 - 18100729
Alignment:
Q  18 taacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactat 86  Q
    ||||||| || |||||  || |||| ||||||||| |||||||| | ||||||| ||||||||||||||    
T  18100797 taacctacttggttgtcaagttgcacctgctgatcacacggtgatccttacgtgcggggtctatactat 18100729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 27117483 - 27117443
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtct 79  Q
    |||| ||||||||| |||||||| |||||||||||||||||    
T  27117483 tgcacctgctgatcacacggtgatcattacgtgtggggtct 27117443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 178 - 467
Target Start/End: Original strand, 26291542 - 26291838
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacat 276  Q
    |||||| |||||||||||||   ||||||||||| ||||||||||||||| |||||||| ||| | ||||||| ||| | | ||||||||||||||||||    
T  26291542 gtaattaaaacataaacttaaattagagttcctaaatttccaaaggtatggtggtcagtgttcctaaaggttctctcatctatgaatcttagaagtacat 26291641  T
Q  277 aacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtc 373  Q
    |||| ||||||  |||  |||||| ||||||  || | |||||| | ||||||||||||||| |   || ||||||||||||| |||| |||||||||||    
T  26291642 aacacactctccttctcggtagttttacaaactgacagccctatgagcgtctaccttaccaaagtgtgaggagaatggagttattgggctgatttaagtc 26291741  T
Q  374 atgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacct-cctaagtacttacta 467  Q
     |||| |  | ||||||||||||||||||||| ||||  | |||| |||||| ||  |  |||||||||| || ||||||| |||||||||||||||    
T  26291742 gtgaagtcacttgtttccttaattactaactaattactacatgatgtcagcaaatgtttatcaatattaggtatgtcacctccctaagtacttacta 26291838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 467
Target Start/End: Original strand, 45553601 - 45553896
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacat 276  Q
    ||||||||||||||||||||     | ||||||| ||||||||||||||| ||| |||| ||| | ||||||  | | | | |||||||||| ||| |||    
T  45553601 gtaattgaaacataaacttaatacggcgttcctaaatttccaaaggtatggtggccagtgttcctaaaggttttcccatctatgaatcttaggagtgcat 45553700  T
Q  277 aacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtc 373  Q
    |||| |||||   |||| |||||| |||||| ||  | |||||||| || |||||||||||| |   || |||||||||||||||| | |||||||||||    
T  45553701 aacacactcttcctcttggtagttctacaaatgggcagccctatcagcgactaccttaccaaggtgtgaggagaatggagttactgtgctgatttaagtc 45553800  T
Q  374 atgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    ||||| ||   |||||||||||||||||||||||||| ||||| ||| || ||||| ||||| |||||| | | ||||||||||||||||||||||    
T  45553801 atgaagtcacttgtttccttaattactaactagttacatcttggttttagtagattttactcgatattaataatgtcacctcctaagtacttacta 45553896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 259 - 474
Target Start/End: Complemental strand, 45621463 - 45621239
Alignment:
Q  259 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagtt 355  Q
    |||| ||||||||||||||| | | |||   |||| |||||| |||||| ||| |||||||||||||||||||||||||| |   || ||||||| ||||    
T  45621463 tgaaccttagaagtacataagacaatcttcctcttggtagttctacaaacggacaaccctatcaacgtctaccttaccaaggtgcgaggagaatgaagtt 45621364  T
Q  356 actgggttgatttaagtcatgaa--atcgtgtttccttaattactaactagttacct----cttgatttcagcagattctactcaatattagttacgtca 449  Q
    | | || ||||||||||| ||||  | | |||||||||||||||||||||||||| |    | |||||||||||||||    ||||||||||||  ||||    
T  45621363 agtaggctgatttaagtcgtgaagtaacttgtttccttaattactaactagttacttactacatgatttcagcagatttgcatcaatattagttgtgtca 45621264  T
Q  450 cctcctaagtacttactaatagggt 474  Q
    |||||||||||||||||| ||||||    
T  45621263 cctcctaagtacttactattagggt 45621239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 474
Target Start/End: Original strand, 27418692 - 27418996
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtc-agtattcatgaaggttcc-tcgtatttgaatcttagaagtaca 275  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||    | ||| ||  | || ||||| || | | |||||||||||| ||||    
T  27418692 gtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatgacttcctagtgtttctaaatgttccctcatctatgaatcttagaaataca 27418791  T
Q  276 taacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa--tggaagag-aatggagttactgggttgatttaagt 372  Q
    ||||| | |||   ||| |||||||||||||| ||  | |||||||  ||||||||||||||   || ||||  |||||||||  |||| | ||||||||    
T  27418792 taacacattcttcctctcagtagttgtacaaacggttatccctatccgcgtctaccttaccagggtgaaagaataatggagtttttgggctcatttaagt 27418891  T
Q  373 catgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacct-cctaagtacttactaat 469  Q
    | | || ||   |||||||||||||||||||||||||   | ||||||||||||||| |  |||||||||| || || |||| ||||||||||||||||     
T  27418892 cgtaaagtcacctgtttccttaattactaactagttattacctgatttcagcagattttcatcaatattaggtatgtaacctccctaagtacttactaac 27418991  T
Q  470 agggt 474  Q
    |||||    
T  27418992 agggt 27418996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 13777117 - 13777209
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||  ||||||||||||||| |   ||||||||||| |||||| | ||||| | |||||||||||||||||||||| |||||||    
T  13777117 tgtttccttaatctctaactagttacctcctaggttcagcagattttactcagtcttagtaatgtcacctcctaagtacttactactagggtc 13777209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 31804218 - 31804126
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||||||||||||||||||| |   ||||||||||| |||||  ||||| | | ||||||| |||||||||||||| |||||||    
T  31804218 tgtttccttaattactaactagttacctcctaggttcagcagattttactcggtattattaatgtcaccttctaagtacttactactagggtc 31804126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 467
Target Start/End: Original strand, 17350038 - 17350124
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagtt--acgtcacctcctaagtacttacta 467  Q
    ||||||||||||||||||||||||||||| | | ||||||||||| |||||| |||||  |  | ||||||||||||||||||||||    
T  17350038 tgtttccttaattactaactagttacctcctaagttcagcagattttactcactattatattaatgtcacctcctaagtacttacta 17350124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 494
Target Start/End: Complemental strand, 16075896 - 16075739
Alignment:
Q  344 gagaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgattt-----cagcagattctactcaat 436  Q
    |||||| ||||||||||| |  |||||||| |||| |  | |||||||||||||||||||||||||| || ||||||     ||  || || ||||||||    
T  16075896 gagaattgagttactgggctattttaagtcgtgaagttacttgtttccttaattactaactagttacatcctgatttaatttcaaaagtttttactcaat 16075797  T
Q  437 attagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    |||||||| ||||||||||||||| ||||||  | |||| |||  |||||||||||||    
T  16075796 attagttatgtcacctcctaagtatttactatcatggtccactcgctttcggtttctt 16075739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 494
Target Start/End: Complemental strand, 20172044 - 20171934
Alignment:
Q  384 gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaact 483  Q
    ||||||||||| | |||||||||||||| |   ||  ||||||| |||| ||||||||| | |||||||||||||||||||||| ||||||| |||  ||    
T  20172044 gtttccttaataattaactagttacctcctaggttttgcagattttacttaatattagtaatgtcacctcctaagtacttactactagggtcaactcgct 20171945  T
Q  484 ttcggtttctt 494  Q
    |||||| ||||    
T  20171944 ttcggtatctt 20171934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 474
Target Start/End: Original strand, 27419838 - 27420142
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtc-agtattcatgaaggttcc-tcgtatttgaatcttagaagtaca 275  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||    | ||| ||  | || ||||| || | | |||||||||||| ||||    
T  27419838 gtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatgacttcctagtgtttctaaatgttccctcatctatgaatcttagaaataca 27419937  T
Q  276 taacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa--tggaagag-aatggagttactgggttgatttaagt 372  Q
    ||||| | |||   ||| |||||||||||||| ||  | ||||||   ||||||||||||||   || ||||  |||||||||  |||| | ||||||||    
T  27419938 taacacattcttcctctcagtagttgtacaaacggttatccctattcgcgtctaccttaccagggtgaaagaataatggagtttttgggctcatttaagt 27420037  T
Q  373 catgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacct-cctaagtacttactaat 469  Q
    | | || ||   |||||||||||||||||||||||||   | ||||||||||||||| |  |||||||||| || || |||| ||||||||||||||||     
T  27420038 cgtaaagtcacctgtttccttaattactaactagttattacctgatttcagcagattttcatcaatattaggtatgtaacctccctaagtacttactaac 27420137  T
Q  470 agggt 474  Q
    |||||    
T  27420138 agggt 27420142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 494
Target Start/End: Original strand, 15339938 - 15340049
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    |||||||||||||| |||||| |||| || |   ||||||||||| |||| | ||||||| | |||||||||||| ||||||||| ||||||| ||| |     
T  15339938 tgtttccttaattaataactatttacatcctaggttcagcagattttacttagtattagtcatgtcacctcctaaatacttactactagggtcaactcag 15340037  T
Q  483 tttcggtttctt 494  Q
    ||||||| ||||    
T  15340038 tttcggtatctt 15340049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 474
Target Start/End: Complemental strand, 23011158 - 23011075
Alignment:
Q  391 taattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggt 474  Q
    |||||| ||||||||||| ||||   ||||| ||||| |||||||||||| | | |||||||||||||||||||||| ||||||    
T  23011158 taattaataactagttacatctttggttcaggagattttactcaatattattaatgtcacctcctaagtacttactactagggt 23011075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 26652762 - 26652688
Alignment:
Q  326 tctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatc-gtgtttccttaattacta 399  Q
    ||||||||||||| | ||||||||| ||||||| ||||||||||||||||||| ||   ||||||||||||||||    
T  26652762 tctaccttaccaaggaaagagaatgaagttactaggttgatttaagtcatgaagtcacagtttccttaattacta 26652688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 474
Target Start/End: Complemental strand, 25887304 - 25887212
Alignment:
Q  381 cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggt 474  Q
    ||||| |||||||||| |||||||||||||| |   |||| || ||| ||||| |||||||| | |||||||||||||||||||||| ||||||    
T  25887304 cgtgtctccttaattattaactagttacctcctaggttcatcaaatt-tactccatattagtaatgtcacctcctaagtacttactactagggt 25887212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 12950467 - 12950375
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||||||||| ||||||||| |   |||| || ||| |||||| ||||||| | ||| |||||||| ||||||||| |||||||    
T  12950467 tgtttccttaattactaacaagttacctcctaggttcaacatattttactcagtattagtaatgtcgcctcctaaatacttactactagggtc 12950375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 21070975 - 21070903
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggt 489  Q
    ||||||||||| || ||||||||||| | ||||||||| ||| ||||||||  |||||||||| |||||||||    
T  21070975 ttcagcagattttagtcaatattagtaatgtcacctccgaagcacttactaccagggtctactcactttcggt 21070903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 22568276 - 22568368
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||| ||| |||||||||||||| |   |||| || ||| |||||||||||||| | |||| ||||||| ||||||||| |||||||    
T  22568276 tgtttccttagttattaactagttacctcgtaggttcaacatattttactcaatattagtaatgtcatctcctaaatacttactactagggtc 22568368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 475
Target Start/End: Original strand, 32086034 - 32086118
Alignment:
Q  391 taattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||| ||||||||||| || |   |||| || ||| |||||||||||||| | |||||||||||||||||||||| |||||||    
T  32086034 taattaataactagttacatcctaggttcaacatattttactcaatattagtaatgtcacctcctaagtacttactactagggtc 32086118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 21072225 - 21072159
Alignment:
Q  344 gagaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 408  Q
    ||||||||||||||| || |||||||||||||||| |  | |||||||| |||||||||||||||||    
T  21072225 gagaatggagttactaggctgatttaagtcatgaagtcacttgtttcctcaattactaactagttac 21072159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 472
Target Start/End: Complemental strand, 25884777 - 25884690
Alignment:
Q  385 tttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagg 472  Q
    ||||| |||||| ||||||||||| || |   ||| | ||||| |||||||||||||| |||| ||||||| ||||||||||||||||    
T  25884777 tttccctaattaataactagttacatcctaggttcggaagattttactcaatattagtaacgttacctcctgagtacttactaatagg 25884690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 28765991 - 28766041
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||| |||||| |||||||||||||| | ||||||||||||||||||||||    
T  28765991 ttcatcagattttactcaatattagtaatgtcacctcctaagtacttacta 28766041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 29849673 - 29849738
Alignment:
Q  48 tgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 113  Q
    |||||||||||||  | ||||||||||||||||| |||| ||||| |||  |||||||||||||||    
T  29849673 tgatcgcacggtgctccttacgtgtggggtctatgctatctcggttgatctaggtctatccctccg 29849738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 408
Target Start/End: Original strand, 25939722 - 25939840
Alignment:
Q  295 gtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg-gaa--gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttcc 389  Q
    |||||| |||||| || ||  ||||||| ||||||||||||||| | |||  ||||||||| |||||||  | |||||||||||||| ||   |||||||    
T  25939722 gtagttctacaaacggggagacctatcagcgtctaccttaccaaggtgaaaggagaatggaattactggacttatttaagtcatgaagtcacatgtttcc 25939821  T
Q  390 ttaattactaactagttac 408  Q
    |||||||||||||| ||||    
T  25939822 ttaattactaactaattac 25939840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 29031773 - 29031816
Alignment:
Q  295 gtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 338  Q
    |||||| |||||| ||| ||||||||||||||||||||||||||    
T  29031773 gtagttctacaaacggacaaccctatcaacgtctaccttaccaa 29031816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 473
Target Start/End: Complemental strand, 20174045 - 20173955
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaataggg 473  Q
    ||||||| |||||| ||||||||||| || | | || || ||||| |||||||||||| | | ||||||| ||| |||||||||| |||||    
T  20174045 tgtttccctaattaataactagttacatcctaagtttagtagattttactcaatattactaatgtcaccttctatgtacttactactaggg 20173955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 21078251 - 21078193
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagt 236  Q
    |||||||||||||||||||| | | | ||||||| ||||||||||||||| ||| ||||    
T  21078251 gtaattgaaacataaacttaagtttgtgttcctaaatttccaaaggtatggtggccagt 21078193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 28605536 - 28605498
Alignment:
Q  429 tactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  28605536 tactcaatattagtaatgtcacctcctaagtacttacta 28605498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 29850051 - 29850109
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||| |||||| |||||||||||||| | |||||||| ||||||||||||  |||||||    
T  29850051 ttcaacagattttactcaatattagtaatgtcacctcttaagtacttactgctagggtc 29850109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 20174396 - 20174327
Alignment:
Q  44 ctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 113  Q
    |||||||| |||| |||| | ||||||||  |||||||||||| ||||| |||  |||||||||||||||    
T  20174396 ctgctgattgcacagtgatccttacgtgtaaggtctatactatctcggttgatctaggtctatccctccg 20174327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 485
Target Start/End: Complemental strand, 23006637 - 23006536
Alignment:
Q  384 gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaact 483  Q
    |||||| |||||| ||||||||||| || |   |||| || ||| |||||||||||||| | |||| ||| ||||||||||||| ||| ||| ||| |||    
T  23006637 gtttccctaattaataactagttacatcctaggttcaacatattttactcaatattagtaatgtcaactcttaagtacttactactagcgtcaactcact 23006538  T
Q  484 tt 485  Q
    ||    
T  23006537 tt 23006536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 418
Target Start/End: Complemental strand, 41790051 - 41789975
Alignment:
Q  344 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgattt 418  Q
    ||||||| |||||||| | ||| |||||||||||| ||   |||||| ||||||||||||||||||| || ||||||    
T  41790051 gagaatgaagttactgagctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 41789975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 28928980 - 28929020
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtct 79  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  28928980 tgcacctgctgatcgcacggtgatccttacgtgtggggtct 28929020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 29027971 - 29028027
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtca 234  Q
    |||||||||||||| |||||   | | ||||||| ||||||||||||||||||||||    
T  29027971 gtaattgaaacatagacttaaattggcgttcctaaatttccaaaggtatgatggtca 29028027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 178 - 441
Target Start/End: Original strand, 21018323 - 21018584
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacat 276  Q
    |||||||||||||||  |||  ||||||||| |||||||||||| ||||| |||||||| ||| | ||||||| ||| | | ||||||||| ||| ||||    
T  21018323 gtaattgaaacataattttaccgtagagttcttagatttccaaatgtatggtggtcagtgttccttaaggttctctcatctatgaatcttacaagcacat 21018422  T
Q  277 aacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttactgggttgatttaagtcatg 376  Q
    |||| ||||||  ||| ||| ||| |||||| ||  |||||||||   |||||||||||     |||||||||||||||| |||||||||||||||| ||    
T  21018423 aacacactctccttctaagtggttctacaaacgggcaaccctatccgtgtctaccttacgt---gaagagaatggagttattgggttgatttaagtcgtg 21018519  T
Q  377 aaatcgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 441  Q
    || || | ||||||||||||||||||||||||  | |||||||| || ||  || ||||||||||    
T  21018520 aagtcatttttccttaattactaactagttactacctgatttcaacatatgttattcaatattag 21018584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 344 - 486
Target Start/End: Original strand, 22245939 - 22246083
Alignment:
Q  344 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 441  Q
    |||||||||||||||| | ||||||||||| |||| ||   |||||||||||||||||| ||||||| || || ||||| |||||| |||||||||||||    
T  22245939 gagaatggagttactgagctgatttaagtcgtgaagtcaattgtttccttaattactaattagttacatcctggtttcaacagattttactcaatattag 22246038  T
Q  442 ttacgtcacctcctaagtacttactaatagggtctactaactttc 486  Q
    ||| ||||||||||| ||||| |||| ||||||| ||| ||||||    
T  22246039 ttatgtcacctcctatgtactcactactagggtccactcactttc 22246083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 341 - 467
Target Start/End: Complemental strand, 13907728 - 13907600
Alignment:
Q  341 gaagagaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac-ctcttgatttcagcagattctactcaata 437  Q
    |||||||||||||||||| |||||||||||||| |||| |  | ||||||||||||||||||||||||||  || | ||||||||||||| |  ||||||    
T  13907728 gaagagaatggagttactaggttgatttaagtcgtgaagtcacttgtttccttaattactaactagttactatcat-atttcagcagattttcatcaata 13907630  T
Q  438 ttagttacgtcacctcctaagtacttacta 467  Q
    |||| || ||||||||||||||||||||||    
T  13907629 ttaggtatgtcacctcctaagtacttacta 13907600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 465
Target Start/End: Complemental strand, 821149 - 820857
Alignment:
Q  176 gagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga-tggtcagtattcatgaaggttcctcgtatttgaatcttagaagtac 274  Q
    ||||||||||||||||||||||   |||||||| || ||||||||||||| || |   || | ||| | |||||||||| ||| ||||||||||||||||    
T  821149 gagtaattgaaacataaacttaaattagagttcgtaaatttccaaaggtacgacttcccaatgttcctaaaggttcctcatatatgaatcttagaagtac 821050  T
Q  275 ataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa--tggaag-agaatggagttactgggttgatttaag 371  Q
    ||| || ||||||  |||  |||||| |||||| ||  | | |||||| |||||||||||| ||  || ||| ||||||||||||||||| |||||||||    
T  821049 atagcacactctccctctcggtagttctacaaacgggaagctctatcagcgtctaccttacgaatgtgcaagaagaatggagttactgggctgatttaag 820950  T
Q  372 tcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacc-tcctaagtacttac 465  Q
    |  |||| |  | ||||||||||||||||| |||  ||||   ||||||||||| ||  |  |||||||||| || |||||| ||||||||||||||    
T  820949 ttgtgaagtcacttgtttccttaattactagcta-ctacc---tgatttcagcaaatgttcatcaatattaggtatgtcaccttcctaagtacttac 820857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 467
Target Start/End: Original strand, 6290290 - 6290585
Alignment:
Q  179 taattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacata 277  Q
    |||||||||||||| | ||   || |||||||| ||||||||||||||| |    ||| ||| | ||||||| ||| | | |||||||||||||| ||||    
T  6290290 taattgaaacataatcctaaattaaagttcctaaatttccaaaggtatggtttctagtgttcctaaaggttctctcatctatgaatcttagaagtgcata 6290389  T
Q  278 acatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtca 374  Q
    ||||||||||  |||| |||||| ||||||  || | | |||||| ||||||||||||||| |   ||  |||||| ||||| || | ||||||||||||    
T  6290390 acatactctccttcttggtagttctacaaacagacatctctatcagcgtctaccttaccaaggtgcgagtagaatgaagttattgtgctgatttaagtca 6290489  T
Q  375 tgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacct-cctaagtacttacta 467  Q
    |||| |  | || ||||||||||||| |||| ||||  | |||||||||| |||  |  |||||||||| || ||||||| ||||| |||||||||    
T  6290490 tgaagtcacttggttccttaattacttactaattactacctgatttcagctgatgttcatcaatattaggtatgtcacctccctaaatacttacta 6290585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 16245127 - 16245045
Alignment:
Q  385 tttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||||||||||| |||||||||||||| |   ||||||| ||| |||||||||||||| | ||||||||||||||||||||||    
T  16245127 tttccttaattattaactagttacctcctaggttcagcatattttactcaatattagtaatgtcacctcctaagtacttacta 16245045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 3115824 - 3115732
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||  ||||||||||||||| |   ||||||||||| |||||||||||||| | ||||| |||||||||||| ||| |||||||    
T  3115824 tgtttccttaatatctaactagttacctcataggttcagcagattttactcaatattagtaatgtcacgtcctaagtacttgctactagggtc 3115732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 5509028 - 5509120
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| ||||  ||||||||||||||  |   ||||||||||| |||||||||||||| | |||||||||||||||||||||| |||||||    
T  5509028 tgtttccctaatctctaactagttaccttctaggttcagcagattttactcaatattagtaatgtcacctcctaagtacttactactagggtc 5509120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 486
Target Start/End: Complemental strand, 8116372 - 8116269
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    |||||||||||||| || ||||||| ||| | | || |||||||| |||||||||||||| | |||||||| ||||||||| ||| ||||||| ||| ||    
T  8116372 tgtttccttaattattacctagttatctcctaagttaagcagattttactcaatattagtaatgtcacctcttaagtacttgctattagggtcaactcac 8116273  T
Q  483 tttc 486  Q
    ||||    
T  8116272 tttc 8116269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 391 - 494
Target Start/End: Complemental strand, 19171257 - 19171154
Alignment:
Q  391 taattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtt 490  Q
    ||||||||||||||||||||| |   ||||||||||| |||||  ||||| | | |||||||||||| ||||||||| ||||||| |||| ||||||||     
T  19171257 taattactaactagttacctcctaggttcagcagattttactcggtattactaatgtcacctcctaaatacttactactagggtcaactagctttcggta 19171158  T
Q  491 tctt 494  Q
    ||||    
T  19171157 tctt 19171154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 467
Target Start/End: Complemental strand, 2167071 - 2166991
Alignment:
Q  387 tccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||||||||| |||||||||||||| |   ||||||| ||| || ||||||||||| | |||||||| |||||||||||||    
T  2167071 tccttaattattaactagttacctcctaggttcagcaaattttagtcaatattagtaatgtcacctcttaagtacttacta 2166991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 2723261 - 2723169
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| |||||| ||||| ||||| || | | ||||||||||| |||||||||||  | | |||||||||||||||||||| | |||||||    
T  2723261 tgtttccgtaattaataacttgttacatcataagttcagcagattatactcaatattgataatgtcacctcctaagtacttacgactagggtc 2723169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 467
Target Start/End: Original strand, 41509154 - 41509238
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||||||||||||| |||||| ||||||| |   |||| || ||| || ||||||||||| | ||||||||||||||||||||||    
T  41509154 tgtttccttaattattaactaattacctcctatgttcaacaaattttattcaatattagtaatgtcacctcctaagtacttacta 41509238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 21326065 - 21326123
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| ||| |||||||||||| | | |||||||||||||||||||||| |||||||    
T  21326065 ttcagcatattttactcaatattaataatgtcacctcctaagtacttactactagggtc 21326123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 38083893 - 38083946
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggt 92  Q
    ||||||||||||| ||||||||| | ||||||| |||||||||||||| |||||    
T  38083893 tgcatctgctgattgcacggtgatccttacgtgcggggtctatactatctcggt 38083946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 314704 - 314767
Alignment:
Q  345 agaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagtt 406  Q
    ||||||||||||||||  | |||||||||||||| ||   ||||||||||||||||||||||||    
T  314704 agaatggagttactggactaatttaagtcatgaagtcacttgtttccttaattactaactagtt 314767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 20398090 - 20398140
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga 228  Q
    |||||||||||||| |||||   ||||||||||| ||||||||||||||||    
T  20398090 gtaattgaaacatatacttaaattagagttcctaaatttccaaaggtatga 20398140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 21325654 - 21325748
Alignment:
Q  18 taacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctcc 112  Q
    |||||||||| |||||  || ||||  || ||||| ||| |||| | ||||||| |||||||||||||| ||||| ||||  |||||||||||||    
T  21325654 taacctaattggttgtcaagttgcacatgttgatcacacagtgatccttacgtgcggggtctatactatctcggttgatttcggtctatccctcc 21325748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 488
Target Start/End: Complemental strand, 12772324 - 12772224
Alignment:
Q  385 tttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactt 484  Q
    |||||||||||| |||||||||||||| |   ||||| ||||| |||||||||||||  | ||||   |||| |||||||||| ||||||| |||  |||    
T  12772324 tttccttaattattaactagttacctcctaggttcagtagattttactcaatattagcaatgtca---cctacgtacttactactagggtcaactcgctt 12772228  T
Q  485 tcgg 488  Q
    ||||    
T  12772227 tcgg 12772224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 8446506 - 8446598
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||| |||||||| ||||| ||||| || | |  | |||||||| | |||| ||||||| | ||||||||||||||||||| || |||||||    
T  8446506 tgttttcttaattaataacttgttacatcctaagattagcagattttgctcagtattagtaatgtcacctcctaagtacttattactagggtc 8446598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 324 - 494
Target Start/End: Original strand, 25024042 - 25024217
Alignment:
Q  324 cgtctaccttaccaatgg---aagagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgattt 418  Q
    ||||||||||||||| ||   | ||||||||| |||||||| |||||||||||||| | ||   |||||||||||||| ||||||||||| || |   ||    
T  25024042 cgtctaccttaccaagggtcgaggagaatggatttactgggatgatttaagtcatgcagtcacttgtttccttaattaataactagttacatcataggtt 25024141  T
Q  419 cagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||| |||| ||| ||||    
T  25024142 cagcagattttactcaatattagtaatgtcacctcctaagtacttactaatagggtcaactagcttttggtatctt 25024217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 19635952 - 19635860
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||||  ||||||||||||| | | |||| || ||| |||||||||||||| | |||||||||||||||||||||| |||||||    
T  19635952 tgtttccttaattataaactagttacctcctaagttcaacaaattttactcaatattagtaatgtcacctcctaagtacttactactagggtc 19635860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 403
Target Start/End: Complemental strand, 4215092 - 4214958
Alignment:
Q  270 agtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttactgggttgattta 369  Q
    |||||||| || ||||||| ||||||||||| |||||| |   || ||||||| |||||||||||| || | ||||||||||||||| |||  |||||||    
T  4215092 agtacatagcacactctctctcttagtagttctacaaacgtgcaatcctatcaccgtctaccttactaaggaaagagaatggagttattggactgattta 4214993  T
Q  370 agtcatgaaatcgt-gtttccttaattactaacta 403  Q
    | || |||| | || ||||||||||||||||||||    
T  4214992 aatcgtgaagttgtagtttccttaattactaacta 4214958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 494
Target Start/End: Complemental strand, 9264429 - 9264318
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaac 482  Q
    |||||||||||||||||||||||||| |  | ||||||||||||| |||| |||| |||||| | ||||||||||||| ||| ||  |||||| | |  |    
T  9264429 tgtttccttaattactaactagttacattctaatttcagcagattttacttaatagtagttatgccacctcctaagtaattattatcagggtccaatcgc 9264330  T
Q  483 tttcggtttctt 494  Q
    ||||||||||||    
T  9264329 tttcggtttctt 9264318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 11781034 - 11781126
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| ||||| ||||| || |   |||| || ||| |||||||||||||| | |||||||||||||||||||||| |||||||    
T  11781034 tgtttccttaattattaacttgttacttcatatgttcaccatattatactcaatattagtaatgtcacctcctaagtacttactagtagggtc 11781126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 467
Target Start/End: Complemental strand, 12839335 - 12839123
Alignment:
Q  261 aatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaat---ggagttac 357  Q
    |||||||||||||||||||| ||||||  |||  |||||| |||||| ||  | |||||| | |||||||||||||||||  | |||||   ||||||||    
T  12839335 aatcttagaagtacataacacactctccctctcggtagttctacaaacgggcatccctataagcgtctaccttaccaatgtgaaagaataatggagttac 12839236  T
Q  358 tgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacct-cc 454  Q
    | ||   ||||||  ||| || ||   ||||||||||||||||||||||||||  | ||||| || |||||  |  |||||||||| || ||||||| ||    
T  12839235 taggaaaatttaaaacataaagtcacctgtttccttaattactaactagttactacatgattacaacagatgttcatcaatattaggtatgtcacctccc 12839136  T
Q  455 taagtacttacta 467  Q
    |||||||||||||    
T  12839135 taagtacttacta 12839123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 12761619 - 12761729
Alignment:
Q  75 ggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaaccca 174  Q
    |||||||||||| || |||||||||||| ||||| ||||  |||| |||  ||||||||| ||| || |||| ||||| ||||||||||||||| || ||    
T  12761619 ggtctatactatctcagtcgattaaggtttatccttccgcttgttgagtcgtacctactagtcacactatgatccttatgtgtggggtttatctcactca 12761718  T
Q  175 tgagtaattga 185  Q
     | ||||||||    
T  12761719 agggtaattga 12761729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 3775125 - 3775274
Alignment:
Q  17 ataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggat 116  Q
    |||||||||| ||||||  || |||| ||| ||||||||  |||| ||||| ||| ||  |||||||||| ||| |||||| | ||||||||||||| ||    
T  3775125 ataacctaatcagttgtcaagctgcacctgttgatcgcaatgtgatcattatgtgcggtatctatactatctcgatcgatttacgtctatccctccgcat 3775224  T
Q  117 gttaagttatacctactaatcatacgatgacccttacgtgtggggtttat 166  Q
    ||| |||| || || || |||| ||| ||| |||||| | ||||||||||    
T  3775225 gttgagttgtatctgctgatcacacggtgatccttacatatggggtttat 3775274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 5679898 - 5679990
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| |||||| | ||||||||| || |   |||| || ||| |||||||||||||| | |||||||||||||||||||||| |||||||    
T  5679898 tgtttccctaattaattactagttacatcctaggttcaacaaattttactcaatattagtaatgtcacctcctaagtacttactactagggtc 5679990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 14572540 - 14572612
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggt 489  Q
    |||||| |||| |||||||||||||| | ||||| |||||||||||||||  |||||||||||  ||||||||    
T  14572540 ttcagcggattttactcaatattagtaatgtcacttcctaagtacttactgctagggtctactcgctttcggt 14572612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 467
Target Start/End: Original strand, 19092994 - 19093078
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    ||||||| |||||| ||||||||||| || |   |||| |||||| |||||| ||||||| | ||||||||||||||||||||||    
T  19092994 tgtttccctaattaataactagttacatcctatgttcaacagattttactcagtattagtaatgtcacctcctaagtacttacta 19093078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 19927912 - 19927840
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggt 489  Q
    ||||||||||| |||||||||||| | | ||||||||||||||| |||||| ||||||| |||  ||||||||    
T  19927912 ttcagcagattttactcaatattattaatgtcacctcctaagtaattactactagggtcaactcgctttcggt 19927840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 14649210 - 14649305
Alignment:
Q  18 taacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 113  Q
    ||||||| | ||||||  || |||| ||| |||||||||||||| |  ||||||||||||||||||||| ||||| |||  |||| ||||||||||    
T  14649210 taacctagtcagttgtcaagctgcacctgttgatcgcacggtgatccatacgtgtggggtctatactatctcggttgatctaggtatatccctccg 14649305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 5529080 - 5529145
Alignment:
Q  345 agaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttac 408  Q
    |||||||| ||||||| ||||||||||||||||| |||  ||||| ||||||| ||||||||||||    
T  5529080 agaatggaattactggattgatttaagtcatgaagtcgcctgtttacttaattgctaactagttac 5529145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 24638866 - 24638788
Alignment:
Q  383 tgtttccttaattact-aactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagta 460  Q
    |||||||||||||| | ||||||||||||| |   ||||||| ||| |||||||||||||| | |||||||||||||||    
T  24638866 tgtttccttaattatttaactagttacctcctaggttcagcaaattttactcaatattagtaatgtcacctcctaagta 24638788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 5956643 - 5956735
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| ||||||||||| || |   |||| || ||| ||||| |||||| | | |||||||| ||||||||||||| |||||||    
T  5956643 tgtttccttaattaataactagttacatcctagcttcaacaaattttactcgatattaataatgtcacctcttaagtacttactactagggtc 5956735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 19604901 - 19604809
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| ||||||||| ||| ||||||| |   || | || ||| |||||||||||||| | |||||||||| ||||||||||| |||||||    
T  19604901 tgtttccataattactagctaattacctcctaggtttaacatattttactcaatattagtaatgtcacctcctgagtacttactactagggtc 19604809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 9850851 - 9850760
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggt 474  Q
    |||||||||||||| ||| ||||||| ||     |||| |||||| |||||||||||||| | |||| || |||||||||||||| ||||||    
T  9850851 tgtttccttaattaataaatagttacatcccaggttcatcagattttactcaatattagtaatgtcatcttctaagtacttactattagggt 9850760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 475
Target Start/End: Original strand, 17107326 - 17107373
Alignment:
Q  428 ctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||| ||||||| | |||||||||||||||||||||| |||||||    
T  17107326 ctactcagtattagtaatgtcacctcctaagtacttactactagggtc 17107373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 14649493 - 14649551
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||| ||||| ||||||||| |||| | |||||||||||||||||||| | |||||||    
T  14649493 ttcagtagattttactcaataatagtaatgtcacctcctaagtacttacaactagggtc 14649551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 22173303 - 22173241
Alignment:
Q  48 tgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccct 110  Q
    |||||||||||||| | |||||||  ||||||||||||| ||||| |||  ||||||||||||    
T  22173303 tgatcgcacggtgatccttacgtgcagggtctatactatctcggttgatctaggtctatccct 22173241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 486
Target Start/End: Complemental strand, 26115359 - 26115220
Alignment:
Q  347 aatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagtta 444  Q
    ||||||||||||||| ||||| |||||||||| ||   |||||||| ||||||||||||||||| || |   || || | ||| |||  ||||||||| |    
T  26115359 aatggagttactgggctgatt-aagtcatgaagtcacttgtttcctaaattactaactagttacatcctaggtttagtatattttac-gaatattagtaa 26115262  T
Q  445 cgtcacctcctaagtacttactaatagggtctactaactttc 486  Q
     |||||||| ||||||||| ||| ||||||| ||| ||||||    
T  26115261 tgtcacctcttaagtactttctattagggtcaacttactttc 26115220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 13587858 - 13587914
Alignment:
Q  363 tgatttaagtcatgaaatcgt--gtttccttaattactaactagttacctcttgatt 417  Q
    ||||||||||| |||| ||||  |||| |||||||||||||||||||| ||||||||    
T  13587858 tgatttaagtcgtgaagtcgtctgttttcttaattactaactagttacttcttgatt 13587914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 13909192 - 13909265
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctcc 112  Q
    |||| ||| |||||||||||||| | ||| |||||||||||||||| | || || |||| |||| |||||||||    
T  13909192 tgcacctgttgatcgcacggtgatccttaagtgtggggtctatactgtctccgttgatttaggtatatccctcc 13909265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Original strand, 17276820 - 17276865
Alignment:
Q  429 tactcaatattagttacgtcacctcctaagtacttactaatagggt 474  Q
    |||||||||||||| |  | ||||||||||||||||||||||||||    
T  17276820 tactcaatattagtaatataacctcctaagtacttactaatagggt 17276865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 475
Target Start/End: Complemental strand, 22351274 - 22351233
Alignment:
Q  434 aatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||| | |||||||||||||||||||||| |||||||    
T  22351274 aatattagtaatgtcacctcctaagtacttactattagggtc 22351233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 180 - 408
Target Start/End: Complemental strand, 5052550 - 5052318
Alignment:
Q  180 aattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttcctcgtatttgaatcttagaagtacataac 279  Q
    |||| ||||||||||||    ||||||||||| |||||| ||| |||| |||||| | ||| | | ||||| ||  |||||| |||||||||||||||||    
T  5052550 aattaaaacataaacttgaattagagttcctaaatttcccaagttatggtggtcaatgttcctaatggttc-tctcatttgagtcttagaagtacataac 5052452  T
Q  280 atactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtcatg 376  Q
    | ||||||   ||  |||||| ||||||  |  |||||||||| | ||||||||||||| |   || |||||||||| ||||||||| ||||||||||||    
T  5052451 acactctcccactctgtagttctacaaacaggcaaccctatcagcatctaccttaccaaggtgcgaggagaatggagctactgggttaatttaagtcatg 5052352  T
Q  377 aaat--cgtgtttccttaattactaactagttac 408  Q
    || |  | ||||||||||||||| ||||||||||    
T  5052351 aagtcacttgtttccttaattaccaactagttac 5052318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 13314406 - 13314314
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||||||||||| ||||||| |   ||||||| ||| |||||| |||| |||| || ||||||||||||||||||| |||||||    
T  13314406 tgtttccttaattactaactaattacctcctaggttcagcatattttactcagtatttgttatgtaacctcctaagtacttactactagggtc 13314314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 408
Target Start/End: Original strand, 24905100 - 24905336
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttc-ctcgtatttgaatcttagaagtacat 276  Q
    ||||||||||||||||||||   |||| |||||| ||||| ||||||||||||  || | ||  | ||||||| ||| ||| ||||||| ||||||||||    
T  24905100 gtaattgaaacataaacttaaattagaattcctaaatttctaaaggtatgatgaccattgttactcaaggttctctcatatatgaatctaagaagtacat 24905199  T
Q  277 aacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtc 373  Q
    |  | ||||| | |||  |||||| ||||||  |  | ||||||||  |||||||||||||| |   || ||||||||| ||| |||||||||||||||     
T  24905200 agaacactctatctctcggtagttctacaaacaggcagccctatcagtgtctaccttaccaaggtgcgaggagaatggacttattgggttgatttaagtg 24905299  T
Q  374 atgaaat--cgtgtttccttaattactaactagttac 408  Q
     |||| |  | |||||||| |||||||||||||||||    
T  24905300 gtgaagtcacttgtttcctcaattactaactagttac 24905336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 28276199 - 28276107
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||  ||||||||||||| | |   ||||| ||||| |||||||||||| | | |||||||||||||||||||||| |||||||    
T  28276199 tgtttccttaatctctaactagttaccacctaggttcagtagattttactcaatattattaatgtcacctcctaagtacttactactagggtc 28276107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 17965561 - 17965640
Alignment:
Q  259 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 338  Q
    |||||||||||||||||||||| ||||||  |||||||| || ||||||  || | |||||||| |||||||||||||||    
T  17965561 tgaatcttagaagtacataacacactctccctcttagtaattctacaaacagacagccctatcagcgtctaccttaccaa 17965640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 378
Target Start/End: Original strand, 17977079 - 17977283
Alignment:
Q  178 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatgaaggttcctcg-tatttgaatcttagaagtacat 276  Q
    ||||||||||||||||||||   | || |||||| ||||||||||||||| |||  ||| ||| | |||||||  |  | | ||||||||||||||||||    
T  17977079 gtaattgaaacataaacttaaattggatttcctaaatttccaaaggtatggtggctagtgttcgtaaaggttctccaatctatgaatcttagaagtacat 17977178  T
Q  277 aacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa--tggaa-gagaatggagttactgggttgatttaagtc 373  Q
    | || ||| ||  |||  |||||| |||||| ||  | |||||||| ||||| |||||||||  || || ||||||||||||||| || |||||||||||    
T  17977179 agcacactatccctctcggtagttttacaaacgggaagccctatcagcgtctgccttaccaaggtgcaaggagaatggagttactaggctgatttaagtc 17977278  T
Q  374 atgaa 378  Q
     ||||    
T  17977279 gtgaa 17977283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 472
Target Start/End: Complemental strand, 24584266 - 24584177
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagg 472  Q
    |||||| ||||||| |||||||||||||| |   ||||| ||||| |||||||||||||| | ||||  |||||||||||||||| ||||    
T  24584266 tgtttctttaattattaactagttacctcataggttcagtagattttactcaatattagtaatgtcatttcctaagtacttactactagg 24584177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 466
Target Start/End: Original strand, 2637696 - 2637772
Alignment:
Q  390 ttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttact 466  Q
    ||||||| ||||||||||| || |   |||| |||||| |||||||||||||| | |||||||||||||||||||||    
T  2637696 ttaattaataactagttacatcctaggttcaacagattttactcaatattagtaatgtcacctcctaagtacttact 2637772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 14528475 - 14528547
Alignment:
Q  39 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctc 111  Q
    |||| |||||| ||||||||||| | ||||||| |||||||||||||| ||||| |||  |||||||||||||    
T  14528475 tgcacctgctggtcgcacggtgaaccttacgtgaggggtctatactatctcggttgatctaggtctatccctc 14528547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 467
Target Start/End: Original strand, 21315321 - 21315405
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttacta 467  Q
    |||||||||||| |||||||||||||||| |   ||||  ||||| |||| ||||||||| | ||||||||| ||||||||||||    
T  21315321 tgtttccttaatcactaactagttacctcctaggttcaatagattttactaaatattagtaatgtcacctcccaagtacttacta 21315405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 30486849 - 30486933
Alignment:
Q  344 gagaatggagttactgggttgatttaagtcatgaaatc--gtgtttccttaattactaactagttacctcttgatttcagcagat 426  Q
    ||||||| ||||| |||  |||||||||||||||| ||  |||||| |||||||||||| |||||||  | ||||||||||||||    
T  30486849 gagaatgaagttattggactgatttaagtcatgaagtcacgtgttttcttaattactaattagttactacctgatttcagcagat 30486933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Original strand, 17977330 - 17977365
Alignment:
Q  432 tcaatattagttacgtcacctcctaagtacttacta 467  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17977330 tcaatattagttatgtcacctcctaagtacttacta 17977365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 19787487 - 19787533
Alignment:
Q  429 tactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| | ||||||||||||||||||| || |||||||    
T  19787487 tactcaatattagtaatgtcacctcctaagtacttaatattagggtc 19787533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 494
Target Start/End: Complemental strand, 24521067 - 24520954
Alignment:
Q  383 tgtttccttaattactaactagttacctcttgatttcagcagatt--ctactcaatattagttacgtcacctcctaagtacttactaatagggtctacta 480  Q
    ||||||||||||||||||  |||||| ||||   ||||||||| |  ||| ||  | ||||| |||||||||||||||||||||||| ||| ||| |||     
T  24521067 tgtttccttaattactaatcagttacatcttaggttcagcagagttactattcggtcttagtaacgtcacctcctaagtacttactactagcgtcaactc 24520968  T
Q  481 actttcggtttctt 494  Q
     |||||||| ||||    
T  24520967 tctttcggtatctt 24520954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 494
Target Start/End: Original strand, 6885716 - 6885764
Alignment:
Q  446 gtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    |||||||||||||||||||||| ||||||| |||  |||||||| ||||    
T  6885716 gtcacctcctaagtacttactactagggtcaactcgctttcggtatctt 6885764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 494
Target Start/End: Complemental strand, 25181866 - 25181754
Alignment:
Q  383 tgtttccttaattactaa-ctagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaa 481  Q
    ||||||| |||||||||| |||||||| || |   |||| || ||| |||| ||||||||| | ||| |||| ||||||||||||| ||||||| |||      
T  25181866 tgtttccctaattactaaactagttacatcctaggttcaacaaattttactgaatattagtaatgtcgcctcttaagtacttactactagggtcaactct 25181767  T
Q  482 ctttcggtttctt 494  Q
    |||||||| ||||    
T  25181766 ctttcggtatctt 25181754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 34497448 - 34497504
Alignment:
Q  36 agatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggt 92  Q
    |||||||  |||||||| |||| ||| | |||||||||||||||||||||| |||||    
T  34497448 agatgcacatgctgatcacacgatgatccttacgtgtggggtctatactatctcggt 34497504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 81292 - 81384
Alignment:
Q  383 tgtttccttaattactaactagttacctctt-gatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||||||||||||| |||||||||||||| | ||||| |||||||| |||||||||||||| | ||||||| ||||||| |||| |||||||||    
T  81292 tgtttccttaattattaactagttacctcatagattt-agcagattttactcaatattagtaatgtcaccttctaagtaattacaaatagggtc 81384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 55590 - 55657
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactt 484  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||| ||| ||||    
T  55590 ttcagcagattttactcaatattagtaatgtcacctcctaagtacttactactagggtcaacttactt 55657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 1417 - 1304
Alignment:
Q  48 tgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgac 147  Q
    |||| ||| ||||| | ||| |||||||||||||| ||| ||| |||||| |||||||||||| |  ||||| ||||  |||||||  |||||||||||     
T  1417 tgattgcatggtgatccttatgtgtggggtctatattatctcgatcgatttaggtctatccct-ctaatgttgagttccacctactggtcatacgatgat 1319  T
Q  148 ccttacgtgtggggt 162  Q
    |||||||||||||||    
T  1318 ccttacgtgtggggt 1304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 475
Target Start/End: Original strand, 11956 - 12045
Alignment:
Q  386 ttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||||||||||||||||||||||||     ||||||| ||| |||||| ||||||| | || ||||||||||||| ||||| |||||||    
T  11956 ttccttaattactaactagttacctccgaggttcagcaaattttactcagtattagtaatgttacctcctaagtacgtactactagggtc 12045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 453
Target Start/End: Complemental strand, 183939 - 183831
Alignment:
Q  347 aatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagtta 444  Q
    ||||||||||||||| |||||||||||||||| |  | ||||||||||||||| ||||||||||  | ||| ||| ||||||  |  |||||||||| ||    
T  183939 aatggagttactgggctgatttaagtcatgaagtcacttgtttccttaattaccaactagttactgcctgaattcggcagatgtttatcaatattaggta 183840  T
Q  445 cgtcacctc 453  Q
     ||||||||    
T  183839 tgtcacctc 183831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 156387 - 156447
Alignment:
Q  384 gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagtta 444  Q
    |||||||||||||||||||| |||| || ||||||||||| ||  ||||||||||||||||    
T  156387 gtttccttaattactaactacttacatcctgatttcagcatatgttactcaatattagtta 156447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 244836 - 244764
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggt 489  Q
    |||||| |||| |||||||||||||| | ||||| |||||||||||||||  |||||||||||  ||||||||    
T  244836 ttcagcggattttactcaatattagtaatgtcacttcctaagtacttactgctagggtctactcgctttcggt 244764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 168082 - 167987
Alignment:
Q  18 taacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 113  Q
    ||||||| | ||||||  || |||| ||| |||||||||||||| |  ||||||||||||||||||||| ||||| |||  |||| ||||||||||    
T  168082 taacctagtcagttgtcaagctgcacctgttgatcgcacggtgatccatacgtgtggggtctatactatctcggttgatctaggtatatccctccg 167987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 167799 - 167741
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    ||||| ||||| ||||||||| |||| | |||||||||||||||||||| | |||||||    
T  167799 ttcagtagattttactcaataatagtaatgtcacctcctaagtacttacaactagggtc 167741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 4513 - 4579
Alignment:
Q  344 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttac 408  Q
    ||||||| ||||| |||| |||||||||||||||| ||   ||||||||||||||||||||||||||    
T  4513 gagaatgaagttattgggctgatttaagtcatgaagtcacttgtttccttaattactaactagttac 4579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 494
Target Start/End: Complemental strand, 42601 - 42524
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtctactaactttcggtttctt 494  Q
    |||| |||||| |||||||||||||| | ||||||| |||||||||||||  ||||||| |||  |||||||| ||||    
T  42601 ttcaacagattttactcaatattagtaatgtcaccttctaagtacttactcctagggtcaactcgctttcggtatctt 42524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 7033 - 6975
Alignment:
Q  417 ttcagcagattctactcaatattagttacgtcacctcctaagtacttactaatagggtc 475  Q
    |||| |||||| |||||||||||||| | |||| ||||||||||| ||||| |||||||    
T  7033 ttcaacagattttactcaatattagtaatgtcaactcctaagtacatactactagggtc 6975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University