View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17274_low_5 (Length: 484)
Name: NF17274_low_5
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 11859521 - 11859061
Alignment:
| Q |
1 |
tgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||| ||||||||| |||||| |||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
11859521 |
tgaaacaatgaccaagattcctcttgattaagcccctgcaacttcaaaacatgtctagcagcaattttgttggcaacatggctgcttcgtgttgttgtaa |
11859422 |
T |
|
| Q |
101 |
caagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattcttaatctcaattcgcaaatcatctat |
200 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||| | |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
11859421 |
caagtatgacggtatcagtccttccacctgcagcctgcgctaatttcttctgcaacttctcgagatcaccattctcaatctcaattcgcaaatcatctat |
11859322 |
T |
|
| Q |
201 |
aacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatgagggccattgatccaaattgct |
300 |
Q |
| |
|
||||||||||| |||||||| |||| || || |||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
11859321 |
aacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatggattcaacatcaaattggtgatgaagaccattgatccaaattgct |
11859222 |
T |
|
| Q |
301 |
tggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859221 |
tggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaag |
11859122 |
T |
|
| Q |
401 |
gaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctct |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859121 |
gaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctct |
11859061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 3 - 458
Target Start/End: Complemental strand, 12038302 - 12037862
Alignment:
| Q |
3 |
aaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaaca |
102 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||| ||| ||| ||||||||| ||| || |||||||| || ||| |||||||| || ||||| || || |
|
|
| T |
12038302 |
aaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatgtccagcagcaatgttgtcggcgacatggttactacgtgtagt---aatg |
12038206 |
T |
|
| Q |
103 |
agtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattct---taatctcaattcgcaaatcatcta |
199 |
Q |
| |
|
||||| || ||||||| | || ||| |||| || ||||||||||||||||||||| |||| |||| || ||||||||| || ||||||||||| |
|
|
| T |
12038205 |
agtatggccgtatcagcacggccaccaacagcttcagttaatttcttctgcaacttctcaagataatcaggctcattaatctcaaatctcaaatcatcta |
12038106 |
T |
|
| Q |
200 |
taacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatgagggccattgatccaaattgc |
299 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| | | ||||| |||| |||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
12038105 |
taacaagtaagaggcgtttctcatgatgagact---cggcaacactttttgctatagattcaacatcaaa--ggtt----------ttgatccaaattgg |
12038021 |
T |
|
| Q |
300 |
ttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaa |
399 |
Q |
| |
|
||| || ||| || || || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| | |
|
|
| T |
12038020 |
ttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaacaataacaataacaaca |
12037921 |
T |
|
| Q |
400 |
ggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctc |
458 |
Q |
| |
|
|||||||||| |||| || |||| |||| |||||||||||||| ||| | |||||| |
|
|
| T |
12037920 |
ggaacagcagcatcagtgttcttcaggttcaccagtttatctataagctcttccttctc |
12037862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 317 - 409
Target Start/End: Complemental strand, 11827037 - 11826945
Alignment:
| Q |
317 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcag |
409 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | || ||||||||||| |
|
|
| T |
11827037 |
ctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaatagcaataaaaacaggaacagcag |
11826945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11827380 - 11827171
Alignment:
| Q |
1 |
tgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||| ||||||||| | ||| | |||| | |||||| ||||||||||| | ||| || || |
|
|
| T |
11827380 |
tgaaacaatgaccaagattccttttgattaagcccctgcaacttcaaaacatatgtagcaccaatattgttggcgacatggttgctacatgtggt---aa |
11827284 |
T |
|
| Q |
101 |
caagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatca---ttcttaatctcaattcgcaaatcatc |
197 |
Q |
| |
|
|||||| |||||| || | || |||||| ||||||| ||||||||||| ||||||| ||| |||||| || |||||| |||||| ||||||||| |
|
|
| T |
11827283 |
tgagtatcacggtattggtacggccaccagcaacctccatcaatttcttctgtaacttctcgaggtcatcatgcttattaatcgcaattctcaaatcatc |
11827184 |
T |
|
| Q |
198 |
tataacaagtaag |
210 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
11827183 |
tataataagtaag |
11827171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 386
Target Start/End: Original strand, 11903281 - 11903379
Alignment:
| Q |
288 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
386 |
Q |
| |
|
||||||||||| || ||||||| || |||||||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11903281 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat |
11903379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 11730895 - 11730826
Alignment:
| Q |
317 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
386 |
Q |
| |
|
|||||||||||||||| || ||||| || || ||||||||||| || || ||||| |||||||||||||| |
|
|
| T |
11730895 |
ctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaat |
11730826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 11730451 - 11730382
Alignment:
| Q |
317 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
386 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| ||||||||||| || || ||||| | |||||||||||| |
|
|
| T |
11730451 |
ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat |
11730382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University