View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_low_6 (Length: 444)
Name: NF17274_low_6
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 23755267 - 23754857
Alignment:
| Q |
20 |
aaaatgacgactcctgcaa-ttgaatctgacatcaaagtttccctattcttgtgaaaatattgaaaagcaaatatatgactcaacagttcaggtacattt |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
23755267 |
aaaatgacgactcctgcaaattgaatctgacatcaaagtttccctattcttgtgaaaatattgaaaagcaaatatatgactcaacaggtcaggtacactt |
23755168 |
T |
|
| Q |
119 |
ttgactaaccataattcacttctagaattttcacctcaagtcatactattactaattagcactcataaattttcaaatggtgggtctgnnnnnnnn--ct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || |
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| T |
23755167 |
ttgactaaccataattcacttctagaattttcacctcaagtcatactattactaattatcattcataaattttcaaatggtgggtctgttttttttttct |
23755068 |
T |
|
| Q |
217 |
tataattgttatgattgtggggttgcatttcatcgtcatatcgttttctctgatgatcatatgtatatttcattattttcttctcacccactgaatgcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755067 |
tataattgttatgattgtggggttgcatttcatcgtcatatcgttttctctgatgatcatatgtatatttcattattttcttctcacccactgaatgcaa |
23754968 |
T |
|
| Q |
317 |
ggattgggatggcaacaaaactgaaacctactcactctggctcatgttaaatctcacatcaaatgcgatgtgatgatatttacttgagatgagataaagg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
23754967 |
ggattgggatggcaacaaaactgaaacctactcactctgtctcatgttaaatctcacatcaaatgtgatgtgattgtatttacttgagatgagataaagg |
23754868 |
T |
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| Q |
417 |
aatagtatttt |
427 |
Q |
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||||||||||| |
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| T |
23754867 |
aatagtatttt |
23754857 |
T |
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