View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_low_7 (Length: 417)
Name: NF17274_low_7
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 536056 - 536246
Alignment:
| Q |
1 |
agtaccaacttctatcttagaaggtggtttttgctaaacatgaaaacaaaattcggccttcatgaaattaatgcaaaattaggaataataatggtagcaa |
100 |
Q |
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| T |
536056 |
agtaccaacttctatcttagaaggtggtttttgctaaacatgaaaacaaaattcgcccttcatgaaattaatgcaaaattaggaataataatggtagcaa |
536155 |
T |
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| Q |
101 |
atatagcaaagagtctaaaacttcattgtttttaatgcagaaaaacaacaacacccttgctaaatcatagaataaattttcaaagaaccct |
191 |
Q |
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| T |
536156 |
atatagcaaagagtctaaaacttcattgtttttagtgcagaaaaaccacaacacccttgccaaatcatagaataaattttcaaagaaccct |
536246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 180 - 399
Target Start/End: Original strand, 536529 - 536749
Alignment:
| Q |
180 |
tcaaagaaccctatcccacgtaag-------tcaaacaaagaaaccatgaacaatacaataaaactttttctaaatctcttattctttagaagaatttag |
272 |
Q |
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| T |
536529 |
tcaaagaaccctatcccacataagaatataatcaaacaaagaaaccatgaacaatacaataaaactttttctaaacctctt------tagaagaatttag |
536622 |
T |
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| Q |
273 |
cctcttattgtttccacaggtcatagaagaattactatcacatgcaaccatgttctaagctaacttggaagattgacacatcataaacatgtccatagta |
372 |
Q |
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| T |
536623 |
cctcttattgtttccacaggtcatagaagaattactatcatatgcaaccatgttctaagctaacttggaagattgacacatcataaacatgtccatagta |
536722 |
T |
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| Q |
373 |
aatgagtaagaatatgactatttgaca |
399 |
Q |
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| T |
536723 |
aatgagtaagaatatgactatttgaca |
536749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 210 - 399
Target Start/End: Original strand, 5434785 - 5434978
Alignment:
| Q |
210 |
aaagaaaccatgaacaatacaataaaactttttctaaatctcttattctttagaagaatttagcctcttattgtttccacaggtcatagaagaattacta |
309 |
Q |
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| T |
5434785 |
aaagaaaccatgaataatacaataaaactttttccaaacctcttattcttttgaagaatctagcctcctgttgtttccacaggttcaagaaaaattacta |
5434884 |
T |
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| Q |
310 |
tcacatgcaaccatgttctaagctaacttggaagattgaca----catcataaacatgtccatagtaaatgagtaagaatatgactatttgaca |
399 |
Q |
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| T |
5434885 |
tcttttgtaaccatattcaatgttaacttggaagattgacacgcgcatcataaacatgtgcatcgtaaatgagtaaaaatcagactatttgaca |
5434978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 5434591 - 5434650
Alignment:
| Q |
96 |
agcaaatatagcaaagagtctaaaacttcattgtttttaatgcagaaaaacaacaacacc |
155 |
Q |
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| T |
5434591 |
agcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacacc |
5434650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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