View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17274_low_9 (Length: 377)
Name: NF17274_low_9
Description: NF17274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17274_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 4348210 - 4348572
Alignment:
| Q |
1 |
cactatattagataatatgagttacatgattatcaaatttatagaaaaactcaaaagatcaatagtatagttgaaatatctttagatccatcaaaaccaa |
100 |
Q |
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| T |
4348210 |
cactatattagataatatgagttacatgattatcaaatttatagaaaaactcaaaagatcaatagtatagttgaaatatctttagatccatcaaaaccac |
4348309 |
T |
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| Q |
101 |
atagaaaacaaatgtttcttatttttgtaatcttgaacaacccaaacacacaactcttacaaccaatatctataattgtttccttagagttatatcaaca |
200 |
Q |
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| T |
4348310 |
atagaaaacaaatgtttcttatttttgtaatctcgaacaacccaaacacacaactcttacaaccaatatctataattgtttccttagagttatatcaaca |
4348409 |
T |
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| Q |
201 |
atgtaacttgcatatttctaccaactagcgttcccttaaattatttatcaaggctgtcttactttaatttccaaatatt-nnnnnnnnnngttagaaatg |
299 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4348410 |
atgtaacttgcatatttctatcaactagtgttcccttaaa-tatttatcaaggctgtcttactttaatttccaaatattaaaaaaaaaaagttagaaatg |
4348508 |
T |
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| Q |
300 |
ggctgcaaatgcagtcatatgttggagataatgcaatttatggctgctttgcaatgcattattg |
363 |
Q |
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| T |
4348509 |
ggctgcaaatgcagtcatatgttggagataatgcaatttatggctgctttgcaatgcattattg |
4348572 |
T |
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