View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_high_1 (Length: 831)
Name: NF17275_high_1
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 790; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 16 - 821
Target Start/End: Original strand, 1946080 - 1946885
Alignment:
| Q |
16 |
gttttcacccccggatatgacaacatccgttgctctatccgtaacttctatgtaaccatcagtatgctttactcccatgtcacctgtcctaaaccatcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1946080 |
gttttcacccccggatatgacaacatccgttgctctatccgtaacttctatgtaaccatcagtatgctttactcccatgtcacctgtcctgaaccatcca |
1946179 |
T |
|
| Q |
116 |
ccttcaaatgcatcctgtgttgctttcaaatccttgagatatccattcatcacattgtttcccctaaacatcacctcaccgatggtttttgcatcagccg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1946180 |
ccttcaaatgcatcctgtgttgctttcaaatccttgagatatccattcatcacattgtttcccctaaacatcacctcaccgatggtttttgcatcagccg |
1946279 |
T |
|
| Q |
216 |
gcacactcttcattgtaacaggatcttttatatcaagttcgtccattccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggagg |
315 |
Q |
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| T |
1946280 |
gcacactcttcattgtagcaggatcttttatatcaagttcgtccattccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggagg |
1946379 |
T |
|
| Q |
316 |
tagactagcccattctggcttccatgtgcaaattgaagcaggaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgca |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1946380 |
tagactagcccattctggcttccatgtgcaaattgaagcaggaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgca |
1946479 |
T |
|
| Q |
416 |
ctagagaaaatatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcagcttcctaattggtgaatttattaacatgttcagaa |
515 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1946480 |
ctagaaaaaatatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcggcttcctaattggtgaatttattaacatgttcagaa |
1946579 |
T |
|
| Q |
516 |
gtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttg |
615 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1946580 |
gtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttg |
1946679 |
T |
|
| Q |
616 |
agcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgta |
715 |
Q |
| |
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| T |
1946680 |
agcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgta |
1946779 |
T |
|
| Q |
716 |
gccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcat |
815 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1946780 |
gccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcat |
1946879 |
T |
|
| Q |
816 |
cctttg |
821 |
Q |
| |
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|||||| |
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| T |
1946880 |
cctttg |
1946885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 821
Target Start/End: Original strand, 1927962 - 1928773
Alignment:
| Q |
16 |
gttttcacccccggatatgacaacatccgttgctctatccgtaacttctatgtaaccatcagtatgctttactcccatgtcacctgtcctaaaccatcca |
115 |
Q |
| |
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|||||| ||||||||||||| || |||| | | | |||| ||| |||||||||||| |||| |||||||||||||| |||||| ||||||||||||||| |
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| T |
1927962 |
gttttctcccccggatatgataatatccttcgaccgatccttaagttctatgtaaccgtcagaatgctttactcccaagtcaccagtcctaaaccatcca |
1928061 |
T |
|
| Q |
116 |
ccttcaaatgcatcctgtgttgctttcaaatccttgagatatccattcatcacattgtttcccctaaacatcacctcaccgatggtttttgcatcagccg |
215 |
Q |
| |
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|||| ||| | || ||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
1928062 |
cctttaaacgactcttgtgttgcttttaaatcctttagatatccattcatcacagtgtttcccctaaacatcacctcacccatggttttcgcatcagccg |
1928161 |
T |
|
| Q |
216 |
gcacactcttcattgtaacaggatcttttatatcaagttcgtccattccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggagg |
315 |
Q |
| |
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| |||||||||||||| |||||||||||||| |||||| | |||| ||||| ||||||||||||||||||| | || ||||||||||| | ||| ||| |
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| T |
1928162 |
gtacactcttcattgtgacaggatcttttatgtcaagtccttccagtccaatatgttgtactccttgacgcgacttctttttcgcctgctcctctcgaga |
1928261 |
T |
|
| Q |
316 |
tagactagcccattctggcttccatgtgcaaattgaagcaggaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgca |
415 |
Q |
| |
|
|| ||| ||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||| |||| || || |||||||||||||||| |
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| T |
1928262 |
caggctactccattctggtttccatgtgcaaattgatccaggaccataagtttctgtcaaaccatatgaatgaactaaatcaaatcctagttcttccatc |
1928361 |
T |
|
| Q |
416 |
ctagagaaaatatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcagcttcctaat------tggtgaatttattaacatgt |
509 |
Q |
| |
|
||| | || | || ||||| ||||||||||| || |||||||||||||||||| | ||| |||| || || ||||| ||||||||| || |
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|
| T |
1928362 |
ctaaaaaatacgtccggtggcggtggagcaccacctgtcatcactaccaccttcctcggaagtggctttctgatatcaggtggtgcatttattaatgagt |
1928461 |
T |
|
| Q |
510 |
tcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgcc |
609 |
Q |
| |
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|||||| || |||||| || ||| |||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| ||| |
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|
| T |
1928462 |
tcagaactgttggtgcaccccccgtgtgtgttactttgtgcttaaaaatattgtcaaatatccctttagcagttacatttctttggcaaacatttgcgcc |
1928561 |
T |
|
| Q |
610 |
accttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataata |
709 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||||||| |||| |||||||||||||||||||| | | || ||||| ||||| | || | |
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|
| T |
1928562 |
accttgagcagcaataccccaaggaagacaccatccattgcaatgaaacatgggaacacaccataaatacaccggcatagacttcatctcattgagaaga |
1928661 |
T |
|
| Q |
710 |
attgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcac |
809 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| | | |||||| |||||| ||||||| ||||||||||||||| | | ||||||| ||| | |
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| T |
1928662 |
attgtagccaaagaattaagataagcacctctgtggctatatactacacctttaggacttgatgttgttccagaagtgtaattcaaagaaattggatccc |
1928761 |
T |
|
| Q |
810 |
attcatcctttg |
821 |
Q |
| |
|
||||||| |||| |
|
|
| T |
1928762 |
attcatcttttg |
1928773 |
T |
|
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